Literature DB >> 33929568

A fully segmented 3D anatomical atlas of a lizard brain.

Daniel Hoops1,2, Hanyi Weng3, Ayesha Shahid3, Philip Skorzewski3, Andrew L Janke4, Jason P Lerch3,5,6, John G Sled3,5.   

Abstract

As the relevance of lizards in evolutionary neuroscience increases, so does the need for more accurate anatomical references. Moreover, the use of magnetic resonance imaging (MRI) in evolutionary neuroscience is becoming more widespread; this represents a fundamental methodological shift that opens new avenues of investigative possibility but also poses new challenges. Here, we aim to facilitate this shift by providing a three-dimensional segmentation atlas of the tawny dragon brain. The tawny dragon (Ctenophorus decresii) is an Australian lizard of increasing importance as a model system in ecology and, as a member of the agamid lizards, in evolution. Based on a consensus average 3D image generated from the MRIs of 13 male tawny dragon heads, we identify and segment 224 structures visible across the entire lizard brain. We describe the relevance of this atlas to the field of evolutionary neuroscience and propose further experiments for which this atlas can provide the foundation. This advance in defining lizard neuroanatomy will facilitate numerous studies in evolutionary neuroscience. The atlas is available for download as a supplementary material to this manuscript and through the Open Science Framework (OSF; https://doi.org/10.17605/OSF.IO/UJENQ ).

Entities:  

Keywords:  Agamid; Evolutionary neuroscience; Magnetic resonance imaging; Registration; Reptile; Segmentation

Year:  2021        PMID: 33929568     DOI: 10.1007/s00429-021-02282-z

Source DB:  PubMed          Journal:  Brain Struct Funct        ISSN: 1863-2653            Impact factor:   3.270


  32 in total

1.  Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI by augmenting ANIMAL with a template library and label fusion.

Authors:  D Louis Collins; Jens C Pruessner
Journal:  Neuroimage       Date:  2010-05-02       Impact factor: 6.556

2.  Performing label-fusion-based segmentation using multiple automatically generated templates.

Authors:  M Mallar Chakravarty; Patrick Steadman; Matthijs C van Eede; Rebecca D Calcott; Victoria Gu; Philip Shaw; Armin Raznahan; D Louis Collins; Jason P Lerch
Journal:  Hum Brain Mapp       Date:  2012-05-19       Impact factor: 5.038

Review 3.  Greater than the sum of its parts: a review of studies combining structural connectivity and resting-state functional connectivity.

Authors:  Jessica S Damoiseaux; Michael D Greicius
Journal:  Brain Struct Funct       Date:  2009-06-30       Impact factor: 3.270

Review 4.  Stereotaxic atlas for the lizard Gallotia galloti.

Authors:  J M Del Corral; A Miralles; M C Nicolau; B Planas; R V Rial
Journal:  Prog Neurobiol       Date:  1990       Impact factor: 11.685

5.  A three-dimensional digital atlas of the Nile crocodile (Crocodylus niloticus) forebrain.

Authors:  Brendon K Billings; Mehdi Behroozi; Xavier Helluy; Adhil Bhagwandin; Paul R Manger; Onur Güntürkün; Felix Ströckens
Journal:  Brain Struct Funct       Date:  2020-02-03       Impact factor: 3.270

6.  Architectonic studies of the diencephalon of Iguana iguana (Linnaeus).

Authors:  A B Butler; R G Northcutt
Journal:  J Comp Neurol       Date:  1973-06-15       Impact factor: 3.215

7.  A cytoarchitectonic study of the diencephalon of the tegu lizard, Tupinambis nigropunctatus.

Authors:  J A Cruce
Journal:  J Comp Neurol       Date:  1974-02-01       Impact factor: 3.215

8.  Brain stem origins of spinal projections in the lizard Tupinambis nigropunctatus.

Authors:  W L Cruce; D B Newman
Journal:  J Comp Neurol       Date:  1981-05-10       Impact factor: 3.215

9.  Functional MRI in the Nile crocodile: a new avenue for evolutionary neurobiology.

Authors:  Mehdi Behroozi; Brendon K Billings; Xavier Helluy; Paul R Manger; Onur Güntürkün; Felix Ströckens
Journal:  Proc Biol Sci       Date:  2018-04-25       Impact factor: 5.349

10.  A Diffusion MRI Tractography Connectome of the Mouse Brain and Comparison with Neuronal Tracer Data.

Authors:  Evan Calabrese; Alexandra Badea; Gary Cofer; Yi Qi; G Allan Johnson
Journal:  Cereb Cortex       Date:  2015-06-05       Impact factor: 5.357

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  1 in total

1.  Establishing an MRI-Based Protocol and Atlas of the Bearded Dragon (Pogona vitticeps) Brain.

Authors:  Kari D Foss; Krista A Keller; Spencer P Kehoe; Bradley P Sutton
Journal:  Front Vet Sci       Date:  2022-05-13
  1 in total

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