Literature DB >> 33928581

Cationic Dendrimers for siRNA Delivery: Computational Approaches for Characterization.

Domenico Marson1, Suzana Aulic2, Maurizio Fermeglia2, Erik Laurini2, Sabrina Pricl2,3.   

Abstract

Nowadays, computer simulations have been established as a fundamental tool in the design and development of new dendrimer-based nanocarriers for drug and gene delivery. Moreover, the level of detail contained in the information that can be gathered by performing atomistic-scale simulations cannot be obtained with any other available experimental technique. In this chapter we describe the main computational toolbox that can be exploited in the different stages of novel dendritic nanocarrier production-from the initial conception to the stage of biological intermolecular interactions.

Keywords:  Asphericity; Binding free energy; Dendrimer characterization; Molecular dynamics; Molecular mechanics/Poisson-Boltzmann methods; Radius of gyration

Year:  2021        PMID: 33928581     DOI: 10.1007/978-1-0716-1298-9_16

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  43 in total

1.  Poly(amidoamine)-based dendrimer/siRNA complexation studied by computer simulations: effects of pH and generation on dendrimer structure and siRNA binding.

Authors:  Kostas Karatasos; Paola Posocco; Erik Laurini; Sabrina Pricl
Journal:  Macromol Biosci       Date:  2011-12-06       Impact factor: 4.979

2.  Impact of siRNA overhangs for dendrimer-mediated siRNA delivery and gene silencing.

Authors:  Paola Posocco; Xiaoxuan Liu; Erik Laurini; Domenico Marson; Chao Chen; Cheng Liu; Maurizio Fermeglia; Palma Rocchi; Sabrina Pricl; Ling Peng
Journal:  Mol Pharm       Date:  2013-07-25       Impact factor: 4.939

3.  Understanding Effects of PAMAM Dendrimer Size and Surface Chemistry on Serum Protein Binding with Discrete Molecular Dynamics Simulations.

Authors:  Bo Wang; Yunxiang Sun; Thomas P Davis; Pu Chun Ke; Yinghao Wu; Feng Ding
Journal:  ACS Sustain Chem Eng       Date:  2018-07-31       Impact factor: 8.198

Review 4.  Molecular Dynamics Simulation for All.

Authors:  Scott A Hollingsworth; Ron O Dror
Journal:  Neuron       Date:  2018-09-19       Impact factor: 17.173

Review 5.  Tell me something I do not know. Multiscale molecular modeling of dendrimer/ dendron organization and self-assembly in gene therapy.

Authors:  P Posocco; E Laurini; V Dal Col; D Marson; K Karatasos; M Fermeglia; S Pricl
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

6.  Structurally flexible triethanolamine core PAMAM dendrimers are effective nanovectors for DNA transfection in vitro and in vivo to the mouse thymus.

Authors:  Xiaoxuan Liu; Jiangyu Wu; Miriam Yammine; Jiehua Zhou; Paola Posocco; Stephane Viel; Cheng Liu; Fabio Ziarelli; Maurizio Fermeglia; Sabrina Pricl; Genevieve Victorero; Catherine Nguyen; Patrick Erbacher; Jean-Paul Behr; Ling Peng
Journal:  Bioconjug Chem       Date:  2011-11-22       Impact factor: 4.774

7.  Efficient delivery of sticky siRNA and potent gene silencing in a prostate cancer model using a generation 5 triethanolamine-core PAMAM dendrimer.

Authors:  Xiaoxuan Liu; Cheng Liu; Erik Laurini; Paola Posocco; Sabrina Pricl; Fanqi Qu; Palma Rocchi; Ling Peng
Journal:  Mol Pharm       Date:  2012-01-20       Impact factor: 4.939

8.  PAMAM dendrimers for siRNA delivery: computational and experimental insights.

Authors:  Giovanni Maria Pavan; Paola Posocco; Aaron Tagliabue; Marek Maly; Anastasia Malek; Andrea Danani; Enzio Ragg; Carlo V Catapano; Sabrina Pricl
Journal:  Chemistry       Date:  2010-07-12       Impact factor: 5.236

9.  Combination of dendrimer-nanovector-mediated small interfering RNA delivery to target Akt with the clinical anticancer drug paclitaxel for effective and potent anticancer activity in treating ovarian cancer.

Authors:  Shashwati Kala; Abby Sin Chi Mak; Xiaoxuan Liu; Paola Posocco; Sabrina Pricl; Ling Peng; Alice Sze Tsai Wong
Journal:  J Med Chem       Date:  2014-03-18       Impact factor: 7.446

Review 10.  Molecular Modeling to Study Dendrimers for Biomedical Applications.

Authors:  Nuno Martinho; Helena Florindo; Liana Silva; Steve Brocchini; Mire Zloh; Teresa Barata
Journal:  Molecules       Date:  2014-12-08       Impact factor: 4.411

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