Literature DB >> 33925986

Comparative Analysis of Full Genome Sequences of African Swine Fever Virus Isolates Taken from Wild Boars in Russia in 2019.

Ali Mazloum1, Antoinette van Schalkwyk2, Andrey Shotin1, Alexey Igolkin1, Ivan Shevchenko1, Konstantin N Gruzdev1, Natalia Vlasova1.   

Abstract

In this study, we report on the full genome phylogenetic analysis of four ASFV isolates obtained from wild boars in Russia. These samples originated from two eastern and two western regions of Russia in 2019. Phylogenetic analysis indicated that the isolates were assigned to genotype II and grouped according to their geographical origins. The two eastern isolates shared 99.99% sequence identity with isolates from China, Poland, Belgium, and Moldova, whereas the western isolates had 99.98% sequence identity with isolates from Lithuania and the original Georgia 2007 isolate. Based on the full genome phylogenies, we identified three single locus targets, MGF-360-10L, MGF-505-9R, and I267L, that yielded the same resolving power as the full genomes. The ease of alignment and a high level of variation make these targets a suitable selection as additional molecular markers in future ASFV phylogenetic practices.

Entities:  

Keywords:  African swine fever virus; Russian isolates; full-genome sequence; genome markers; phylogenetic analysis

Year:  2021        PMID： 33925986     DOI： 10.3390/pathogens10050521

Source DB:  PubMed          Journal:  Pathogens        ISSN： 2076-0817


  33 in total

1.  Solution structure of a viral DNA polymerase X and evidence for a mutagenic function.

Authors:  A K Showalter; I J Byeon; M I Su; M D Tsai
Journal:  Nat Struct Biol       Date:  2001-11

2.  Circulation of two different variants of intergenic region (IGR) located between the I73R and I329L genes of African swine fever virus strains in Vietnam.

Authors:  Ha Thi Thanh Tran; Anh Duc Truong; Anh Kieu Dang; Duc Viet Ly; Chinh Thi Nguyen; Nhu Thi Chu; Tuan Van Hoang; Huyen Thi Nguyen; Hoang Vu Dang
Journal:  Transbound Emerg Dis       Date:  2021-01-20       Impact factor: 5.005

3.  A Proteomic Atlas of the African Swine Fever Virus Particle.

Authors:  Alí Alejo; Tania Matamoros; Milagros Guerra; Germán Andrés
Journal:  J Virol       Date:  2018-11-12       Impact factor: 5.103

4.  Identification of a New Genotype of African Swine Fever Virus in Domestic Pigs from Ethiopia.

Authors:  J E Achenbach; C Gallardo; E Nieto-Pelegrín; B Rivera-Arroyo; T Degefa-Negi; M Arias; S Jenberie; D D Mulisa; D Gizaw; E Gelaye; T R Chibssa; A Belaye; A Loitsch; M Forsa; M Yami; A Diallo; A Soler; C E Lamien; J M Sánchez-Vizcaíno
Journal:  Transbound Emerg Dis       Date:  2016-05-22       Impact factor: 5.005

5.  Vertical transmission of anti-ASFV antibodies as one of potential causes of seropositive results among young wild boar population in Poland.

Authors:  M Walczak; M Frant; M Juszkiewicz; N Mazur-Panasiuk; K Szymankiewicz; M Bruczyńska; G Woźniakowski
Journal:  Pol J Vet Sci       Date:  2020-03       Impact factor: 0.821

6.  African swine fever virus isolate, Georgia, 2007.

Authors:  Rebecca J Rowlands; Vincent Michaud; Livio Heath; Geoff Hutchings; Chris Oura; Wilna Vosloo; Rahana Dwarka; Tinatin Onashvili; Emmanuel Albina; Linda K Dixon
Journal:  Emerg Infect Dis       Date:  2008-12       Impact factor: 6.883

7.  Identification of Wild Boar-Habitat Epidemiologic Cycle in African Swine Fever Epizootic.

Authors:  Erika Chenais; Karl Ståhl; Vittorio Guberti; Klaus Depner
Journal:  Emerg Infect Dis       Date:  2018-04       Impact factor: 6.883

8.  Molecular Characterization of African Swine Fever Virus, China, 2018.

Authors:  Shengqiang Ge; Jinming Li; Xiaoxu Fan; Fuxiao Liu; Lin Li; Qinghua Wang; Weijie Ren; Jingyue Bao; Chunju Liu; Hua Wang; Yutian Liu; Yongqiang Zhang; Tiangang Xu; Xiaodong Wu; Zhiliang Wang
Journal:  Emerg Infect Dis       Date:  2018-11-17       Impact factor: 6.883

9.  Mathematical Approach to Estimating the Main Epidemiological Parameters of African Swine Fever in Wild Boar.

Authors:  Federica Loi; Stefano Cappai; Alberto Laddomada; Francesco Feliziani; Annalisa Oggiano; Giulia Franzoni; Sandro Rolesu; Vittorio Guberti
Journal:  Vaccines (Basel)       Date:  2020-09-12

10.  Identification and Isolation of Two Different Subpopulations Within African Swine Fever Virus Arm/07 Stock.

Authors:  Daniel Pérez-Núñez; Eva Castillo-Rosa; Gonzalo Vigara-Astillero; Raquel García-Belmonte; Carmina Gallardo; Yolanda Revilla
Journal:  Vaccines (Basel)       Date:  2020-10-25
View more
  3 in total

1.  Genetic Characterization of the Central Variable Region in African Swine Fever Virus Isolates in the Russian Federation from 2013 to 2017.

Authors:  Ali Mazloum; Antoinette Van Schalkwyk; Roman Chernyshev; Andrey Shotin; Fedor I Korennoy; Alexey Igolkin; Alexander Sprygin
Journal:  Pathogens       Date:  2022-08-15

2.  I267L Is Neither the Virulence- Nor the Replication-Related Gene of African Swine Fever Virus and Its Deletant Is an Ideal Fluorescent-Tagged Virulence Strain.

Authors:  Yanyan Zhang; Junnan Ke; Jingyuan Zhang; Huixian Yue; Teng Chen; Qian Li; Xintao Zhou; Yu Qi; Rongnian Zhu; Shuchao Wang; Faming Miao; Shoufeng Zhang; Nan Li; Lijuan Mi; Jinjin Yang; Jinmei Yang; Xun Han; Lidong Wang; Ying Li; Rongliang Hu
Journal:  Viruses       Date:  2021-12-29       Impact factor: 5.048

3.  Genotyping of African Swine Fever Virus (ASFV) Isolates in Romania with the First Report of Genotype II in Symptomatic Pigs.

Authors:  Andrei Ungur; Cristina Daniela Cazan; Luciana Cătălina Panait; Marian Taulescu; Oana Maria Balmoș; Marian Mihaiu; Florica Bărbuceanu; Andrei Daniel Mihalca; Cornel Cătoi
Journal:  Vet Sci       Date:  2021-11-26
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.