Literature DB >> 33925484

Annotation and Molecular Characterisation of the TaIRO3 and TaHRZ Iron Homeostasis Genes in Bread Wheat (Triticum aestivum L.).

Oscar Carey-Fung1, Jesse T Beasley1, Alexander A T Johnson1.   

Abstract

Effective maintenance of plant iron (Fe) homoeostasis relies on a network of transcription factors (TFs) that respond to environmental conditions and regulate Fe uptake, translocation, and storage. The iron-related transcription factor 3 (IRO3), as well as haemerythrin motif-containing really interesting new gene (RING) protein and zinc finger protein (HRZ), are major regulators of Fe homeostasis in diploid species like Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa L.), but remain uncharacterised in hexaploid bread wheat (Triticum aestivum L.). In this study, we have identified, annotated, and characterised three TaIRO3 homoeologs and six TaHRZ1 and TaHRZ2 homoeologs in the bread wheat genome. Protein analysis revealed that TaIRO3 and TaHRZ proteins contain functionally conserved domains for DNA-binding, dimerisation, Fe binding, or polyubiquitination, and phylogenetic analysis revealed clustering of TaIRO3 and TaHRZ proteins with other monocot IRO3 and HRZ proteins, respectively. Quantitative reverse-transcription PCR analysis revealed that all TaIRO3 and TaHRZ homoeologs have unique tissue expression profiles and are upregulated in shoot tissues in response to Fe deficiency. After 24 h of Fe deficiency, the expression of TaHRZ homoeologs was upregulated, while the expression of TaIRO3 homoeologs was unchanged, suggesting that TaHRZ functions upstream of TaIRO3 in the wheat Fe homeostasis TF network.

Entities:  

Keywords:  E3-ligase; KnetMiner; basic helix–loop–helix; hexaploid; homoeologs; ubiquitination

Year:  2021        PMID: 33925484     DOI: 10.3390/genes12050653

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  57 in total

1.  The Arabidopsis basic/helix-loop-helix transcription factor family.

Authors:  Gabriela Toledo-Ortiz; Enamul Huq; Peter H Quail
Journal:  Plant Cell       Date:  2003-08       Impact factor: 11.277

2.  EAR motif-mediated transcriptional repression in plants: an underlying mechanism for epigenetic regulation of gene expression.

Authors:  Sateesh Kagale; Kevin Rozwadowski
Journal:  Epigenetics       Date:  2011-02-01       Impact factor: 4.528

3.  Nicotianamine functions in the Phloem-based transport of iron to sink organs, in pollen development and pollen tube growth in Arabidopsis.

Authors:  Mara Schuler; Rubén Rellán-Álvarez; Claudia Fink-Straube; Javier Abadía; Petra Bauer
Journal:  Plant Cell       Date:  2012-06-15       Impact factor: 11.277

4.  OsIRO2 is responsible for iron utilization in rice and improves growth and yield in calcareous soil.

Authors:  Yuko Ogo; Reiko N Itai; Takanori Kobayashi; May Sann Aung; Hiromi Nakanishi; Naoko K Nishizawa
Journal:  Plant Mol Biol       Date:  2011-02-18       Impact factor: 4.076

Review 5.  All together now: regulation of the iron deficiency response.

Authors:  Nabila Riaz; Mary Lou Guerinot
Journal:  J Exp Bot       Date:  2021-03-17       Impact factor: 6.992

Review 6.  Hemerythrin E3 Ubiquitin Ligases as Negative Regulators of Iron Homeostasis in Plants.

Authors:  Jorge Rodríguez-Celma; Hsuan Chou; Takanori Kobayashi; Terri A Long; Janneke Balk
Journal:  Front Plant Sci       Date:  2019-02-13       Impact factor: 5.753

7.  OsbHLH058 and OsbHLH059 transcription factors positively regulate iron deficiency responses in rice.

Authors:  Takanori Kobayashi; Asami Ozu; Subaru Kobayashi; Gynheung An; Jong-Seong Jeon; Naoko K Nishizawa
Journal:  Plant Mol Biol       Date:  2019-09-24       Impact factor: 4.076

8.  Ensembl Genomes 2020-enabling non-vertebrate genomic research.

Authors:  Kevin L Howe; Bruno Contreras-Moreira; Nishadi De Silva; Gareth Maslen; Wasiu Akanni; James Allen; Jorge Alvarez-Jarreta; Matthieu Barba; Dan M Bolser; Lahcen Cambell; Manuel Carbajo; Marc Chakiachvili; Mikkel Christensen; Carla Cummins; Alayne Cuzick; Paul Davis; Silvie Fexova; Astrid Gall; Nancy George; Laurent Gil; Parul Gupta; Kim E Hammond-Kosack; Erin Haskell; Sarah E Hunt; Pankaj Jaiswal; Sophie H Janacek; Paul J Kersey; Nick Langridge; Uma Maheswari; Thomas Maurel; Mark D McDowall; Ben Moore; Matthieu Muffato; Guy Naamati; Sushma Naithani; Andrew Olson; Irene Papatheodorou; Mateus Patricio; Michael Paulini; Helder Pedro; Emily Perry; Justin Preece; Marc Rosello; Matthew Russell; Vasily Sitnik; Daniel M Staines; Joshua Stein; Marcela K Tello-Ruiz; Stephen J Trevanion; Martin Urban; Sharon Wei; Doreen Ware; Gary Williams; Andrew D Yates; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

9.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

10.  Overlapping transcriptional expression response of wheat zinc-induced facilitator-like transporters emphasize important role during Fe and Zn stress.

Authors:  Shivani Sharma; Gazaldeep Kaur; Anil Kumar; Varsha Meena; Jaspreet Kaur; Ajay Kumar Pandey
Journal:  BMC Mol Biol       Date:  2019-09-23       Impact factor: 2.946

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  2 in total

Review 1.  The Role of Membrane Transporters in the Biofortification of Zinc and Iron in Plants.

Authors:  T P Ajeesh Krishna; T Maharajan; S Antony Ceasar
Journal:  Biol Trace Elem Res       Date:  2022-02-19       Impact factor: 3.738

2.  A Model to Incorporate the bHLH Transcription Factor OsIRO3 within the Rice Iron Homeostasis Regulatory Network.

Authors:  Oscar Carey-Fung; Martin O'Brien; Jesse T Beasley; Alexander A T Johnson
Journal:  Int J Mol Sci       Date:  2022-01-31       Impact factor: 5.923

  2 in total

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