Literature DB >> 33925394

Linking COVID-19 and Heme-Driven Pathophysiologies: A Combined Computational-Experimental Approach.

Marie-Thérèse Hopp1, Daniel Domingo-Fernández2,3, Yojana Gadiya2, Milena S Detzel1, Regina Graf1, Benjamin F Schmalohr1, Alpha T Kodamullil2,4, Diana Imhof1, Martin Hofmann-Apitius2.   

Abstract

The SARS-CoV-2 outbreak was declared a worldwide pandemic in 2020. Infection triggers the respiratory tract disease COVID-19, which is accompanied by serious changes in clinical biomarkers such as hemoglobin and interleukins. The same parameters are altered during hemolysis, which is characterized by an increase in labile heme. We present two computational-experimental approaches aimed at analyzing a potential link between heme-related and COVID-19 pathophysiologies. Herein, we performed a detailed analysis of the common pathways induced by heme and SARS-CoV-2 by superimposition of knowledge graphs covering heme biology and COVID-19 pathophysiology. Focus was laid on inflammatory pathways and distinct biomarkers as the linking elements. In a second approach, four COVID-19-related proteins, the host cell proteins ACE2 and TMPRSS2 as well as the viral proteins 7a and S protein were computationally analyzed as potential heme-binding proteins with an experimental validation. The results contribute to the understanding of the progression of COVID-19 infections in patients with different clinical backgrounds and may allow for a more individual diagnosis and therapy in the future.

Entities:  

Keywords:  COVID-19; SARS-CoV-2; biomarkers; cardiovascular risk; coagulation; heme; heme-binding motifs; hemolysis; inflammation; pathway networks

Mesh:

Substances:

Year:  2021        PMID: 33925394     DOI: 10.3390/biom11050644

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


  97 in total

1.  Computable cause-and-effect models of healthy and Alzheimer's disease states and their mechanistic differential analysis.

Authors:  Alpha Tom Kodamullil; Erfan Younesi; Mufassra Naz; Shweta Bagewadi; Martin Hofmann-Apitius
Journal:  Alzheimers Dement       Date:  2015-04-04       Impact factor: 21.566

2.  Analysis of ACE2 in polarized epithelial cells: surface expression and function as receptor for severe acute respiratory syndrome-associated coronavirus.

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Journal:  J Gen Virol       Date:  2006-06       Impact factor: 3.891

3.  Post-donation COVID-19 identification in blood donors.

Authors:  So-Yong Kwon; Eun-Jin Kim; Yu Soek Jung; Jin Sung Jang; Nam-Sun Cho
Journal:  Vox Sang       Date:  2020-04-21       Impact factor: 2.144

4.  Mechanisms of host receptor adaptation by severe acute respiratory syndrome coronavirus.

Authors:  Kailang Wu; Guiqing Peng; Matthew Wilken; Robert J Geraghty; Fang Li
Journal:  J Biol Chem       Date:  2012-01-30       Impact factor: 5.157

5.  Comorbidity Analysis between Alzheimer's Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs.

Authors:  Reagon Karki; Alpha Tom Kodamullil; Martin Hofmann-Apitius
Journal:  J Alzheimers Dis       Date:  2017       Impact factor: 4.472

6.  Abnormal coagulation parameters are associated with poor prognosis in patients with novel coronavirus pneumonia.

Authors:  Ning Tang; Dengju Li; Xiong Wang; Ziyong Sun
Journal:  J Thromb Haemost       Date:  2020-03-13       Impact factor: 5.824

7.  Dynamics of binding ability prediction between spike protein and human ACE2 reveals the adaptive strategy of SARS-CoV-2 in humans.

Authors:  Xia Xue; Jianxiang Shi; Hongen Xu; Yaping Qin; Zengguang Yang; Shuaisheng Feng; Danhua Liu; Liguo Jian; Linlin Hua; Yaohe Wang; Qi Zhang; Xueyong Huang; Xiaoju Zhang; Xinxin Li; Chunguang Chen; Jiancheng Guo; Wenxue Tang; Jianbo Liu
Journal:  Sci Rep       Date:  2021-02-04       Impact factor: 4.379

Review 8.  Clinical Applications of Hemolytic Markers in the Differential Diagnosis and Management of Hemolytic Anemia.

Authors:  W Barcellini; B Fattizzo
Journal:  Dis Markers       Date:  2015-12-27       Impact factor: 3.434

9.  Characterization of accessory genes in coronavirus genomes.

Authors:  Christian Jean Michel; Claudine Mayer; Olivier Poch; Julie Dawn Thompson
Journal:  Virol J       Date:  2020-08-27       Impact factor: 4.099

10.  Association between ABO blood groups and risk of SARS-CoV-2 pneumonia.

Authors:  Juyi Li; Xiufang Wang; Jian Chen; Yi Cai; Aiping Deng; Ming Yang
Journal:  Br J Haematol       Date:  2020-05-26       Impact factor: 6.998

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  4 in total

Review 1.  COVID-19, Cation Dysmetabolism, Sialic Acid, CD147, ACE2, Viroporins, Hepcidin and Ferroptosis: A Possible Unifying Hypothesis.

Authors:  Attilio Cavezzi; Roberto Menicagli; Emidio Troiani; Salvatore Corrao
Journal:  F1000Res       Date:  2022-01-27

2.  Is hemolysis a novel therapeutic target in COVID-19?

Authors:  Daiki Ousaka; Masahiro Nishibori
Journal:  Front Immunol       Date:  2022-08-19       Impact factor: 8.786

3.  Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System.

Authors:  Sarah Mubeen; Daniel Domingo-Fernández; Sara Díaz Del Ser; Dhwani M Solanki; Alpha T Kodamullil; Martin Hofmann-Apitius; Marie-T Hopp; Diana Imhof
Journal:  J Clin Med       Date:  2022-10-10       Impact factor: 4.964

4.  Kynurenine and Hemoglobin as Sex-Specific Variables in COVID-19 Patients: A Machine Learning and Genetic Algorithms Approach.

Authors:  Jose M Celaya-Padilla; Karen E Villagrana-Bañuelos; Juan José Oropeza-Valdez; Joel Monárrez-Espino; Julio E Castañeda-Delgado; Ana Sofía Herrera-Van Oostdam; Julio César Fernández-Ruiz; Fátima Ochoa-González; Juan Carlos Borrego; Jose Antonio Enciso-Moreno; Jesús Adrián López; Yamilé López-Hernández; Carlos E Galván-Tejada
Journal:  Diagnostics (Basel)       Date:  2021-11-25
  4 in total

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