| Literature DB >> 33924091 |
Obaid Afzal1, Abdulmalik Saleh Alfawaz Altamimi1, Mir Mohammad Shahroz2, Hemant Kumar Sharma2, Yassine Riadi1, Md Quamrul Hassan3.
Abstract
TenEntities:
Keywords: MAGL inhibitors; analgesic; anticancer; benzoxazole; molecular docking; pyrrolidin-2-one
Mesh:
Substances:
Year: 2021 PMID: 33924091 PMCID: PMC8074287 DOI: 10.3390/molecules26082389
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Role of MAGL inhibitors in the alleviation of pain and cancer. PG: prostaglandins; PA: phosphatidic acid; LPA: lysophosphatidic acid; and S1P: sphingosine-1-phosphate.
Figure 2Design of novel pyrrolidin-2-one linked benzoxazole MAGL inhibitors. (A) Binding pattern of reported pyrrolidin-2-one MAGL inhibitors; ZINC12863377 [42], compound 25 [45] and (R)-3t [36]. (B) Designed compounds (11–20).
Figure 3Scheme for synthesis of the intermediates (1–10) and target compounds (11–20). (a) Reflux in water (Method 1); (b) Fusion at 130–140 °C (Method 2); (c) 2-aminophenol, polyphosphoric acid, 150–160 °C, sodium carbonate.
In vitro hMAGL and hFAAH inhibition assay of the synthesized compounds (11–20).
|
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| Compound | R | ||
|---|---|---|---|
|
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| >100 μM | ND |
|
|
| >100 μM | ND |
|
|
| 85 ± 1.5 μM | ND |
|
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| 72 ± 2.1 μM | ND |
|
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| 65 ± 3.2 nM | 28 ± 1.8 μM |
|
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| 34 ± 1.7 nM | 25 ± 2.3 μM |
|
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| 62 ± 2.7 μM | ND |
|
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| 42 ± 1.5 nM | 37 ± 2.2 μM |
|
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| 8.4 ± 1.9 nM | 55 ± 2.7 μM |
|
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| 7.6 ± 0.8 nM | 68 ± 2.1 μM |
|
| -- | 415 ± 3.2 nM | -- |
|
| -- | 10 ± 0.8 nM | -- |
|
| -- | -- | 5 ± 0.6 nM |
ND: Not determined; CAY10499, JZL184 and URB597 (standard control); IC50 values were calculated from GraphPad Prism (ver. 8.0.2). Results are expressed as mean ± SEM (n = 3).
Figure 4Glide XP docking; 3D and 2D representation of the binding pattern of compound 19 (A), and 20 (B) in the catalytic site of MAGL. The picture (2D and 3D) for the docked complexes were obtained from Discovery studio visualizer 2020. The hydrophobicity was calculated from the default option available.
Physicochemical and pharmacokinetic properties of compounds 19 and 20, predicted by QikProp, Schrodinger, for CNS activity.
| S. No. | Property | Description | Range of Properties in CNS Drugs | Compound 19 | Compound 20 | |||
|---|---|---|---|---|---|---|---|---|
| QL | PL | PU | QU | |||||
| 1 | #stars | drug likeness penalty; the higher the value, the less drug-like the molecule | 0 | 0 | 0 | 3 | 0 | 0 |
| 2 | #amine | no. of basic amines | 0 | 1 | 1 | 2 | 0 | 0 |
| 3 | #amidine | no. of amidines groups | 0 | 0 | 0 | 0 | 0 | 0 |
| 4 | #acid | no. of carboxylic acid groups | 0 | 0 | 0 | 0 | 0 | 0 |
| 5 | #amide | no. of amides groups | 0 | 0 | 0 | 1 | 0 | 0 |
| 6 | #rotor | no. of rotatable bonds (without CX3, alkene, amide, small ring) | 0 | 3 | 6 | 8 | 1 | 2 |
| 7 | CNS | a qualitative CNS activity parameter | −2 | 0 | 1 | 2 | −2 | −2 |
| 8 | dipole | computed dipole moment | 0.67 | 1.1 | 3.9 | 8.9 | 9.47 | 10.22 |
| 9 | SASA | solvent accessible surface area | 348 | 487 | 620 | 798 | 584.85 | 617.51 |
| 10 | FOSA | SASA on saturated carbon and attached hydrogen | 16 | 178 | 314 | 464 | 91.99 | 91.96 |
| 11 | FISA | SASA on N, O, and H attached to heteroatoms | 0 | 0 | 64 | 176 | 167.04 | 210.06 |
| 12 | PISA | π component of SASA | 0 | 160 | 292 | 343 | 325.81 | 313.57 |
| 13 | WPSA | weakly polar component of the SASA (halogens, P, and S) | 0 | 0 | 0 | 126 | 0 | 1.94 |
| 14 | volume | solvent accessible volume (Å3) | 492 | 830 | 1104 | 1388 | 1002.52 | 1065.46 |
| 15 | donorHB | estimated no. of hydrogen bonds that would be donated to the solvent water | 0 | 0 | 1 | 3 | 0 | 2 |
| 16 | accptHB | estimated no. of hydrogen bonds that would be accepted from the solvent water | 1 | 2.8 | 5.2 | 8.3 | 6 | 9.5 |
| 17 | glob | a globularity descriptor (1 for a sphere) | 0.77 | 0.82 | 0.88 | 0.93 | 0.82 | 0.81 |
| 18 | QPpolrz | predicted polarizability (Å3) | 14 | 28 | 38 | 49 | 36.43 | 38.19 |
| 19 | QPlogPo/w | octanol−water logP | −0.16 | 2.5 | 4.7 | 6.0 | 2.13 | 0.90 |
| 20 | QPlogS | solubility in log(moles/liter) | −6.5 | −4.6 | −2.5 | −0.42 | −3.99 | −3.99 |
| 21 | CIQPlogS | log of conformation-independent solubility | −6.3 | −4.2 | −2.3 | 0.36 | −4.16 | −3.77 |
| 22 | QPPCaco | apparent Caco-2 cell permeability | 0 | 0 | 810 | 3269 | 258.09 | 100.92 |
| 23 | QPlogBB | brain/blood partition coefficient | −1.2 | −0.06 | 0.75 | 1.2 | −1.12 | −1.65 |
| 24 | QPPMDCK | predicted apparent MDCK cell permeability (nm/s) | 0 | 0 | 634 | 5899 | 114.43 | 42.50 |
| 25 | QPlogKhsa | prediction of binding to human serum albumin | −1 | 0.04 | 0.78 | 1.04 | −0.11 | −0.34 |
| 26 | HumanOralAbsorption | Human oral absorption | 2 | 3 | 3 | 3 | 3 | 3 |
| 27 | PercentHuman | Percent of human oral absorption | 61 | 95 | 100 | 100 | 82.63 | 68.11 |
| 28 | TPSA | van der Waals surface area of polar nitrogen and oxygen atoms | 3.8 | 12 | 54 | 109 | 98.65 | 119.08 |
| 29 | #NandO | no. of N and O atoms | 1 | 2 | 4 | 7 | 7 | 7 |
| 30 | RuleOfFive | no. of violations of Lipinski’s rule of five | 0 | 0 | 0 | 1 | 0 | 0 |
| 31 | RuleOfThree | no. of violations of Jorgensen’s rule of three | 0 | 0 | 0 | 1 | 0 | 0 |
| 32 | #in34 | no. of atoms in three- or four-membered rings | 0 | 0 | 0 | 0 | 0 | 0 |
| 33 | #in56 | no. of atoms in five- or six-membered rings | 5 | 11 | 17 | 24 | 20 | 20 |
| 34 | #noncon | no. of atoms not able to form conjugation in nonaromatic rings | 0 | 0 | 4 | 10 | 3 | 3 |
| 35 | #nonHatm | no. of non-H atoms | 8 | 19 | 25 | 30 | 24 | 25 |
Abbreviations: QL, qualifying lower limit; PL, preferred lower limit; QU, qualifying upper limit; PU, preferred upper limit. # QL, PL, QU and PU values for CNS drug criteria were obtained from reference [49].
In-silico absorption and toxicity profile of compounds 19 and 20 obtained from admetSAR server [50].
| Compound | BBB | HIA | HOB | AMES test | Carcinogenicity | Rat Acute Toxicity |
|---|---|---|---|---|---|---|
| 19 | Yes | Yes | Yes | Mutagenic | Non-carcinogen | 2.30 |
| 20 | Yes | Yes | Yes | Non-Mutagenic | Non-carcinogen | 2.21 |
BBB: blood–brain barrier; HIA: human intestinal permeability; HOB: human oral bioavailability; AMES test is to detect a probable mutagen; carcinogenicity estimates the cancer causing ability of a molecule; LD50: lethal dose which could kill 50% of the population of the organism (rat) on which it is being tested.
Figure 5Formalin-induced analgesic test; a dose of the test compound 20 (5, 10, 30, and 50 mg/kg, p.o, suspended in 0.5% CMC) was administered 4 h before formalin injection (50 µL, 2.5%). Reference drug, gabapentin (100 mg/kg, i.p, dissolved in 0.9% normal saline) was injected 30 min before formalin injection. Total paw licking and biting duration, Stage I (white bar, 0–5 min) and stage II (black bar, 10–30 min) was recorded as a measure of pain behavior. Data is represented as mean ± SEM from a group of 10 animals. * p < 0.05, ** p < 0.01, p > 0.05 (NS, nonsignificant) vs. control (vehicle). GBP: Gabapentin; D5, D10, D30, andD50 are the dose concentrations of test compound 20.
In vitro anticancer screening of compound 19 and 20, against NCI60 cell lines at 10 μM concentration.
| Panel | Cell Line | Compound 19 | Compound 20 | ||
|---|---|---|---|---|---|
| % G | % GI | % G | % GI | ||
| Leukemia | CCRF-CEM | 93.58 | 6.42 | 94.48 | 5.52 |
| HL-60(TB) | 100.09 | −0.09 | 96.15 | 3.85 | |
| K-562 | 98.41 | 1.59 | 98.83 | 1.17 | |
| MOLT-4 | 93.64 | 6.36 | 92.47 | 7.53 | |
| RPMI-8226 | 101.28 | −1.28 | 103.53 | −3.53 | |
| SR | 88.92 | 11.08 | 93.20 | 6.80 | |
| Non-Small Cell Lung Cancer | A549/ATCC | 100.60 | −0.60 | 95.28 | 4.72 |
| HOP-62 | 85.04 | 14.96 | 81.97 | 18.03 | |
| HOP-92 | 104.72 | −4.72 | 77.78 | 22.22 | |
| NCI-H226 | 98.63 | 1.37 | 92.75 | 7.25 | |
| NCI-H23 | 93.07 | 6.93 | 92.19 | 7.81 | |
| NCI-H322M | 94.18 | 5.82 | 99.10 | 0.90 | |
| NCI-H460 | 102.33 | −2.33 | 104.20 | −4.20 | |
| Colon Cancer | COLO 205 | 103.79 | −3.79 | 104.05 | −4.05 |
| HCC-2998 | 102.05 | −2.05 | 100.24 | −0.24 | |
| HCT-116 | 102.14 | −2.14 | 95.78 | −4.22 | |
| HCT-15 | 98.10 | 1.9 | 101.16 | −1.16 | |
| HT29 | 99.25 | 0.75 | 103.23 | −3.23 | |
| KM12 | 105.43 | −5.43 | 101.16 | −1.16 | |
| SW-620 | 102.52 | −2.52 | 102.95 | −2.95 | |
| CNS Cancer | SF-268 | 91.85 | 8.15 | 87.43 | 12.57 |
| SF-295 | 98.21 | 1.79 | 93.71 | 6.29 | |
| SF-539 | 95.59 | 4.41 | 87.58 | 12.42 | |
| SNB-19 | 99.29 | 0.71 | 97.02 | 2.98 | |
| SNB-75 | 64.51 | 35.49 | 68.12 | 31.88 | |
| U251 | 100.97 | −0.97 | 95.21 | 4.79 | |
| Melanoma | LOX IMVI | 89.06 | 10.94 | 92.99 | 7.01 |
| MALME-3M | 88.53 | 11.47 | 93.29 | 6.71 | |
| M14 | 101.37 | −1.37 | 98.58 | 1.42 | |
| MDA-MB-435 | 95.05 | 4.95 | 100.55 | −0.55 | |
| SK-MEL-2 | 102.31 | −2.31 | 111.54 | −11.54 | |
| SK-MEL-28 | 111.25 | −11.25 | 101.79 | −1.79 | |
| SK-MEL-5 | 98.72 | 1.28 | 98.82 | −1.18 | |
| UACC-257 | 106.92 | −6.92 | 110.78 | −10.78 | |
| UACC-62 | 97.59 | 2.41 | 92.78 | 7.22 | |
| Ovarian Cancer | IGROV1 | 104.14 | −4.14 | 101.63 | −1.63 |
| OVCAR-3 | 98.56 | 1.44 | 98.53 | 1.47 | |
| OVCAR-4 | 106.27 | −6.27 | 99.47 | 0.53 | |
| OVCAR-5 | 98.30 | 1.70 | 92.08 | 7.92 | |
| OVCAR-8 | 101.95 | −1.95 | 97.49 | 2.51 | |
| NCI/ADR-RES | 98.37 | 1.63 | 101.45 | −1.45 | |
| SK-OV-3 | 88.34 | 11.66 | 94.77 | 5.23 | |
| Renal Cancer | 786-0 | 104.06 | −4.06 | 98.99 | 1.01 |
| A498 | 113.46 | −13.46 | 113.94 | −13.94 | |
| ACHN | 91.70 | 8.3 | 89.48 | 10.52 | |
| CAKI-1 | 97.19 | 2.81 | 92.35 | 7.65 | |
| SN12C | 97.21 | 2.79 | 95.50 | 4.50 | |
| TK-10 | 110.14 | −10.14 | 114.82 | −14.82 | |
| UO-31 | 78.82 | 21.18 | 70.05 | 29.95 | |
| Prostate Cancer | PC-3 | 91.14 | 8.86 | 88.11 | 11.89 |
| DU-145 | 110.09 | −10.09 | 111.62 | −11.62 | |
| Breast Cancer | MCF7 | 99.19 | 0.81 | 92.32 | 7.68 |
| MDA-MB-231/ATCC | 88.41 | 11.59 | 80.11 | 19.89 | |
| HS 578T | 101.81 | −1.81 | 104.19 | −4.19 | |
| T-47D | 80.01 | 19.99 | 83.24 | 16.24 | |
| MDA-MB-468 | 98.03 | 1.97 | 100.34 | −0.34 | |