Literature DB >> 33923145

Application of Supervised SOM Algorithms in Predicting the Hepatotoxic Potential of Drugs.

Viktor Drgan1, Benjamin Bajželj1,2.   

Abstract

The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evaluate the relative abilities of different supervised self-organizing algorithms in classifying the hepatotoxic potential of drugs. Two modifications of standard counter-propagation training algorithms were proposed to achieve good separation of clusters on the self-organizing map. A series of optimizations were performed using genetic algorithm to select models developed with counter-propagation neural networks, X-Y fused networks, and the two newly proposed algorithms. The cluster separations achieved by the different algorithms were evaluated using a simple measure presented in this paper. Both proposed algorithms showed a better formation of clusters compared to the standard counter-propagation algorithm. The X-Y fused neural network confirmed its high ability to form well-separated clusters. Nevertheless, one of the proposed algorithms came close to its clustering results, which also resulted in a similar number of selected models.

Entities:  

Keywords:  QSAR; classification; hepatotoxicity; supervised neural network

Mesh:

Year:  2021        PMID: 33923145     DOI: 10.3390/ijms22094443

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  8 in total

1.  A comparison of methods for modeling quantitative structure-activity relationships.

Authors:  Jeffrey J Sutherland; Lee A O'Brien; Donald F Weaver
Journal:  J Med Chem       Date:  2004-10-21       Impact factor: 7.446

2.  On outliers and activity cliffs--why QSAR often disappoints.

Authors:  Gerald M Maggiora
Journal:  J Chem Inf Model       Date:  2006 Jul-Aug       Impact factor: 4.956

3.  Supervised self-organizing maps in drug discovery. 1. Robust behavior with overdetermined data sets.

Authors:  Yun-De Xiao; Aaron Clauset; Rebecca Harris; Ersin Bayram; Peter Santago; Jeffrey D Schmitt
Journal:  J Chem Inf Model       Date:  2005 Nov-Dec       Impact factor: 4.956

4.  Examining the predictive accuracy of the novel 3D N-linear algebraic molecular codifications on benchmark datasets.

Authors:  César R García-Jacas; Ernesto Contreras-Torres; Yovani Marrero-Ponce; Mario Pupo-Meriño; Stephen J Barigye; Lisset Cabrera-Leyva
Journal:  J Cheminform       Date:  2016-02-25       Impact factor: 5.514

5.  CPANNatNIC software for counter-propagation neural network to assist in read-across.

Authors:  Viktor Drgan; Špela Župerl; Marjan Vračko; Claudia Ileana Cappelli; Marjana Novič
Journal:  J Cheminform       Date:  2017-05-22       Impact factor: 5.514

Review 6.  Evolving Concept of Activity Cliffs.

Authors:  Dagmar Stumpfe; Huabin Hu; Jürgen Bajorath
Journal:  ACS Omega       Date:  2019-08-26

7.  Hepatotoxicity Modeling Using Counter-Propagation Artificial Neural Networks: Handling an Imbalanced Classification Problem.

Authors:  Benjamin Bajželj; Viktor Drgan
Journal:  Molecules       Date:  2020-01-23       Impact factor: 4.411

8.  PubChem in 2021: new data content and improved web interfaces.

Authors:  Sunghwan Kim; Jie Chen; Tiejun Cheng; Asta Gindulyte; Jia He; Siqian He; Qingliang Li; Benjamin A Shoemaker; Paul A Thiessen; Bo Yu; Leonid Zaslavsky; Jian Zhang; Evan E Bolton
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

  8 in total
  1 in total

1.  Analysis of the uncharted, druglike property space by self-organizing maps.

Authors:  Gergely Takács; Márk Sándor; Zoltán Szalai; Róbert Kiss; György T Balogh
Journal:  Mol Divers       Date:  2021-10-28       Impact factor: 3.364

  1 in total

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