Literature DB >> 33922988

Deep Learning Prediction of Metastasis in Locally Advanced Colon Cancer Using Binary Histologic Tumor Images.

Stefan Schiele1, Tim Tobias Arndt1,2, Benedikt Martin2, Silvia Miller2, Svenja Bauer2, Bettina Monika Banner2, Eva-Maria Brendel2, Gerhard Schenkirsch3, Matthias Anthuber4, Ralf Huss2, Bruno Märkl2, Gernot Müller1.   

Abstract

In this study, we developed the Binary ImaGe Colon Metastasis classifier (BIg-CoMet), a semi-guided approach for the stratification of colon cancer patients into two risk groups for the occurrence of distant metastasis, using an InceptionResNetV2-based deep learning model trained on binary images. We enrolled 291 colon cancer patients with pT3 and pT4 adenocarcinomas and converted one cytokeratin-stained representative tumor section per case into a binary image. Image augmentation and dropout layers were incorporated to avoid overfitting. In a validation collective (n = 128), BIg-CoMet was able to discriminate well between patients with and without metastasis (AUC: 0.842, 95% CI: 0.774-0.911). Further, the Kaplan-Meier curves of the metastasis-free survival showed a highly significant worse clinical course for the high-risk group (log-rank test: p < 0.001), and we demonstrated superiority over other established risk factors. A multivariable Cox regression analysis adjusted for confounders supported the use of risk groups as a prognostic factor for the occurrence of metastasis (hazard ratio (HR): 5.4, 95% CI: 2.5-11.7, p < 0.001). BIg-CoMet achieved good performance for both UICC subgroups, especially for UICC III (n = 53), with a positive predictive value of 80%. Our study demonstrates the ability to stratify colon cancer patients via a semi-guided process on images that primarily reflect tumor architecture.

Entities:  

Keywords:  colon cancer; deep learning; pattern; prognostic biomarker; tumor architecture; tumor stroma ratio

Year:  2021        PMID: 33922988     DOI: 10.3390/cancers13092074

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  33 in total

Review 1.  Poorly differentiated clusters in colorectal cancer: a current review and implications for future practice.

Authors:  Sameer Shivji; James R Conner; Valeria Barresi; Richard Kirsch
Journal:  Histopathology       Date:  2020-07-23       Impact factor: 5.087

2.  G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences.

Authors:  Franz Faul; Edgar Erdfelder; Albert-Georg Lang; Axel Buchner
Journal:  Behav Res Methods       Date:  2007-05

3.  Assessment of invasive growth pattern and lymphocytic infiltration in colorectal cancer.

Authors:  J R Jass; Y Ajioka; J P Allen; Y F Chan; R J Cohen; J M Nixon; M Radojkovic; A P Restall; S R Stables; L J Zwi
Journal:  Histopathology       Date:  1996-06       Impact factor: 5.087

4.  Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology.

Authors:  David Tellez; Geert Litjens; Péter Bándi; Wouter Bulten; John-Melle Bokhorst; Francesco Ciompi; Jeroen van der Laak
Journal:  Med Image Anal       Date:  2019-08-21       Impact factor: 8.545

5.  The proportion of tumor-stroma as a strong prognosticator for stage II and III colon cancer patients: validation in the VICTOR trial.

Authors:  A Huijbers; R A E M Tollenaar; G W v Pelt; E C M Zeestraten; S Dutton; C C McConkey; E Domingo; V T H B M Smit; R Midgley; B F Warren; E C Johnstone; D J Kerr; W E Mesker
Journal:  Ann Oncol       Date:  2012-08-02       Impact factor: 32.976

6.  A machine learning-based prognostic predictor for stage III colon cancer.

Authors:  Dan Jiang; Junhua Liao; Haihan Duan; Qingbin Wu; Gemma Owen; Chang Shu; Liangyin Chen; Yanjun He; Ziqian Wu; Du He; Wenyan Zhang; Ziqiang Wang
Journal:  Sci Rep       Date:  2020-06-25       Impact factor: 4.379

7.  Automatic evaluation of tumor budding in immunohistochemically stained colorectal carcinomas and correlation to clinical outcome.

Authors:  Cleo-Aron Weis; Jakob Nikolas Kather; Susanne Melchers; Hanaa Al-Ahmdi; Marion J Pollheimer; Cord Langner; Timo Gaiser
Journal:  Diagn Pathol       Date:  2018-08-28       Impact factor: 2.644

8.  Artificial intelligence quantified tumour-stroma ratio is an independent predictor for overall survival in resectable colorectal cancer.

Authors:  Ke Zhao; Zhenhui Li; Su Yao; Yingyi Wang; Xiaomei Wu; Zeyan Xu; Lin Wu; Yanqi Huang; Changhong Liang; Zaiyi Liu
Journal:  EBioMedicine       Date:  2020-10-08       Impact factor: 8.143

9.  Tumor proportion in colon cancer: results from a semiautomatic image analysis approach.

Authors:  Benedikt Martin; Bettina Monika Banner; Eva-Maria Schäfer; Patrick Mayr; Matthias Anthuber; Gerhard Schenkirsch; Bruno Märkl
Journal:  Virchows Arch       Date:  2020-02-19       Impact factor: 4.064

Review 10.  The consensus Immunoscore in phase 3 clinical trials; potential impact on patient management decisions.

Authors:  Franck Pagès; Julien Taieb; Pierre Laurent-Puig; Jérôme Galon
Journal:  Oncoimmunology       Date:  2020-08-28       Impact factor: 8.110

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  2 in total

Review 1.  Deep Learning on Histopathological Images for Colorectal Cancer Diagnosis: A Systematic Review.

Authors:  Athena Davri; Effrosyni Birbas; Theofilos Kanavos; Georgios Ntritsos; Nikolaos Giannakeas; Alexandros T Tzallas; Anna Batistatou
Journal:  Diagnostics (Basel)       Date:  2022-03-29

2.  ICOSeg: Real-Time ICOS Protein Expression Segmentation from Immunohistochemistry Slides Using a Lightweight Conv-Transformer Network.

Authors:  Vivek Kumar Singh; Md Mostafa Kamal Sarker; Yasmine Makhlouf; Stephanie G Craig; Matthew P Humphries; Maurice B Loughrey; Jacqueline A James; Manuel Salto-Tellez; Paul O'Reilly; Perry Maxwell
Journal:  Cancers (Basel)       Date:  2022-08-13       Impact factor: 6.575

  2 in total

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