Literature DB >> 33922737

Genome-Wide Identification and Expansion Patterns of SULTR Gene Family in Gramineae Crops and Their Expression Profiles under Abiotic Stress in Oryza sativa.

Zhengqing Yuan1, Weixiong Long1, Haifei Hu2, Ting Liang1, Xiaoyun Luo1, Zhongli Hu1, Renshan Zhu1, Xianting Wu1.   

Abstract

Sulfate transporters (SULTRs), also known as H+/SO42- symporters, play a key role in sulfate transport, plant growth and stress responses. However, the evolutionary relationships and functional differentiation of SULTRs in Gramineae crops are rarely reported. Here, 111 SULTRs were retrieved from the genomes of 10 Gramineae species, including Brachypodium disachyon, Hordeum vulgare, Setaria italica, Sorghum bicolor, Zea mays, Oryza barthii, Oryza rufipogon, Oryza glabbermia and Oryza sativa (Oryza sativa ssp. indica and Oryza sativa ssp. japonica). The SULTRs were clustered into five clades based on a phylogenetic analysis. Syntheny analysis indicates that whole-genome duplication/segmental duplication and tandem duplication events were essential in the SULTRs family expansion. We further found that different clades and orthologous groups of SULTRs were under a strong purifying selective force. Expression analysis showed that rice SULTRs with high-affinity transporters are associated with the functions of sulfate uptake and transport during rice seedling development. Furthermore, using Oryza sativa ssp. indica as a model species, we found that OsiSULTR10 was significantly upregulated under salt stress, while OsiSULTR3 and OsiSULTR12 showed remarkable upregulation under high temperature, low-selenium and drought stresses. OsiSULTR3 and OsiSULTR9 were upregulated under both low-selenium and high-selenium stresses. This study illustrates the expression and evolutionary patterns of the SULTRs family in Gramineae species, which will facilitate further studies of SULTR in other Gramineae species.

Entities:  

Keywords:  Gramineae crops; Oryza sativa; comparative analysis; gene duplication; sulfate transporter

Year:  2021        PMID: 33922737     DOI: 10.3390/genes12050634

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  44 in total

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2.  Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging.

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Journal:  Plant Physiol       Date:  2018-08-01       Impact factor: 8.340

3.  The SULTR gene family in maize (Zea mays L.): Gene cloning and expression analyses under sulfate starvation and abiotic stress.

Authors:  Qin Huang; Meiping Wang; Zongliang Xia
Journal:  J Plant Physiol       Date:  2017-11-10       Impact factor: 3.549

4.  Plant members of a family of sulfate transporters reveal functional subtypes.

Authors:  F W Smith; P M Ealing; M J Hawkesford; D T Clarkson
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

Review 5.  Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes.

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Journal:  Nucleic Acids Res       Date:  2010-11-24       Impact factor: 16.971

7.  Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.

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Journal:  Nat Biotechnol       Date:  2010-05-02       Impact factor: 54.908

8.  GSDS 2.0: an upgraded gene feature visualization server.

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Journal:  Bioinformatics       Date:  2014-12-10       Impact factor: 6.937

9.  Identification and functional characterization of the sulfate transporter gene GmSULTR1;2b in soybean.

Authors:  Yiqiong Ding; Xiaoqiong Zhou; Li Zuo; Hui Wang; Deyue Yu
Journal:  BMC Genomics       Date:  2016-05-20       Impact factor: 3.969

10.  Plant Sulfate Transporters in the Low Phytic Acid Network: Some Educated Guesses.

Authors:  Gian Attilio Sacchi; Fabio Francesco Nocito
Journal:  Plants (Basel)       Date:  2019-12-17
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