Literature DB >> 33922652

Multiregional Sequencing of IDH-WT Glioblastoma Reveals High Genetic Heterogeneity and a Dynamic Evolutionary History.

Sara Franceschi1, Prospero Civita2,3, Francesco Pasqualetti4, Francesca Lessi1, Martina Modena1,5, Serena Barachini1, Mariangela Morelli1, Orazio Santonocito6, Riccardo Vannozzi7, Geoffrey J Pilkington2,3,8, Valerio Ortenzi9, Antonio Giuseppe Naccarato9, Paolo Aretini1, Chiara Maria Mazzanti1.   

Abstract

Glioblastoma is one of the most common and lethal primary neoplasms of the brain. Patient survival has not improved significantly over the past three decades and the patient median survival is just over one year. Tumor heterogeneity is thought to be a major determinant of therapeutic failure and a major reason for poor overall survival. This work aims to comprehensively define intra- and inter-tumor heterogeneity by mapping the genomic and mutational landscape of multiple areas of three primary IDH wild-type (IDH-WT) glioblastomas. Using whole exome sequencing, we explored how copy number variation, chromosomal and single loci amplifications/deletions, and mutational burden are spatially distributed across nine different tumor regions. The results show that all tumors exhibit a different signature despite the same diagnosis. Above all, a high inter-tumor heterogeneity emerges. The evolutionary dynamics of all identified mutations within each region underline the questionable value of a single biopsy and thus the therapeutic approach for the patient. Multiregional collection and subsequent sequencing are essential to try to address the clinical challenge of precision medicine. Especially in glioblastoma, this approach could provide powerful support to pathologists and oncologists in evaluating the diagnosis and defining the best treatment option.

Entities:  

Keywords:  clonal evolution; glioblastoma; multiregional sequencing; spatial heterogeneity; temporal heterogeneity; tumor phylogeny; tumor progression

Year:  2021        PMID: 33922652     DOI: 10.3390/cancers13092044

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  63 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  A human co-culture cell model incorporating microglia supports glioblastoma growth and migration, and confers resistance to cytotoxics.

Authors:  Diana M Leite; Barbara Zvar Baskovic; Prospero Civita; Catia Neto; Mark Gumbleton; Geoffrey J Pilkington
Journal:  FASEB J       Date:  2019-12-05       Impact factor: 5.191

3.  Recurrent somatic mutation of FAT1 in multiple human cancers leads to aberrant Wnt activation.

Authors:  Luc G T Morris; Andrew M Kaufman; Yongxing Gong; Deepa Ramaswami; Logan A Walsh; Şevin Turcan; Stephanie Eng; Kasthuri Kannan; Yilong Zou; Luke Peng; Victoria E Banuchi; Phillip Paty; Zhaoshi Zeng; Efsevia Vakiani; David Solit; Bhuvanesh Singh; Ian Ganly; Linda Liau; Timothy C Cloughesy; Paul S Mischel; Ingo K Mellinghoff; Timothy A Chan
Journal:  Nat Genet       Date:  2013-01-27       Impact factor: 38.330

4.  Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes.

Authors:  Akash Kumar; Evan A Boyle; Mari Tokita; Andrei M Mikheev; Michelle C Sanger; Emily Girard; John R Silber; Luis F Gonzalez-Cuyar; Joseph B Hiatt; Andrew Adey; Choli Lee; Jacob O Kitzman; Donald E Born; Daniel L Silbergeld; James M Olson; Robert C Rostomily; Jay Shendure
Journal:  Genome Biol       Date:  2014-12-03       Impact factor: 13.583

5.  Re-epithelialization and immune cell behaviour in an ex vivo human skin model.

Authors:  Ana Rakita; Nenad Nikolić; Michael Mildner; Johannes Matiasek; Adelheid Elbe-Bürger
Journal:  Sci Rep       Date:  2020-01-08       Impact factor: 4.379

6.  TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data.

Authors:  Antonio Colaprico; Tiago C Silva; Catharina Olsen; Luciano Garofano; Claudia Cava; Davide Garolini; Thais S Sabedot; Tathiane M Malta; Stefano M Pagnotta; Isabella Castiglioni; Michele Ceccarelli; Gianluca Bontempi; Houtan Noushmehr
Journal:  Nucleic Acids Res       Date:  2015-12-23       Impact factor: 16.971

7.  An expression based REST signature predicts patient survival and therapeutic response for glioblastoma multiforme.

Authors:  Jianfeng Liang; Qinghua Meng; Wanni Zhao; Pan Tong; Ping Li; Yuanli Zhao; Xiaodong Zhao; Hua Li
Journal:  Sci Rep       Date:  2016-10-04       Impact factor: 4.379

8.  FastQ Screen: A tool for multi-genome mapping and quality control.

Authors:  Steven W Wingett; Simon Andrews
Journal:  F1000Res       Date:  2018-08-24
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  2 in total

1.  Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools.

Authors:  Natalya V Gubanova; Nina G Orlova; Arthur I Dergilev; Nina Y Oparina; Yuriy L Orlov
Journal:  J Integr Bioinform       Date:  2021-11-16

Review 2.  Targeting NF-κB Signaling in Cancer Stem Cells: A Narrative Review.

Authors:  Barbara Kaltschmidt; Kaya E Witte; Johannes F W Greiner; Florian Weissinger; Christian Kaltschmidt
Journal:  Biomedicines       Date:  2022-01-25
  2 in total

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