Literature DB >> 33922308

Drift of the Subgingival Periodontal Microbiome during Chronic Periodontitis in Type 2 Diabetes Mellitus Patients.

Irina P Balmasova1, Evgenii I Olekhnovich2, Ksenia M Klimina2, Anna A Korenkova2, Maria T Vakhitova2, Elmar A Babaev1, Leyla A Ovchinnikova3, Yakov A Lomakin3, Ivan V Smirnov3,4, Victor N Tsarev1, Ashot M Mkrtumyan1, Alexey A Belogurov3,4, Alexander G Gabibov3,4,5, Elena N Ilina2, Sergey D Arutyunov1.   

Abstract

Since periodontitis and type 2 diabetes mellitus are complex diseases, a thorough understanding of their pathogenesis requires knowing the relationship of these pathologies with other disorders and environmental factors. In this study, the representability of the subgingival periodontal microbiome of 46 subjects was studied by 16S rRNA gene sequencing and shotgun sequencing of pooled samples. We examined 15 patients with chronic periodontitis (CP), 15 patients with chronic periodontitis associated with type 2 diabetes mellitus (CPT2DM), and 16 healthy subjects (Control). The severity of generalized chronic periodontitis in both periodontitis groups of patients (CP and CPT2DM) was moderate (stage II). The male to female ratios were approximately equal in each group (22 males and 24 females); the average age of the subjects was 53.9 ± 7.3 and 54.3 ± 7.2 years, respectively. The presence of overweight patients (Body Mass Index (BMI) 30-34.9 kg/m2) and patients with class 1-2 obesity (BMI 35-45.9 kg/m2) was significantly higher in the CPT2DM group than in patients having only chronic periodontitis or in the Control group. However, there was no statistically significant difference in all clinical indices between the CP and CPT2DM groups. An analysis of the metagenomic data revealed that the alpha diversity in the CPT2DM group was increased compared to that in the CP and Control groups. The microbiome biomarkers associated with experimental groups were evaluated. In both groups of patients with periodontitis, the relative abundance of Porphyromonadaceae was increased compared to that in the Control group. The CPT2DM group was characterized by a lower relative abundance of Streptococcaceae/Pasteurellaceae and a higher abundance of Leptotrichiaceae compared to those in the CP and Control groups. Furthermore, the CP and CPT2DM groups differed in terms of the relative abundance of Veillonellaceae (which was decreased in the CPT2DM group compared to CP) and Neisseriaceae (which was increased in the CPT2DM group compared to CP). In addition, differences in bacterial content were identified by a combination of shotgun sequencing of pooled samples and genome-resolved metagenomics. The results indicate that there are subgingival microbiome-specific features in patients with chronic periodontitis associated with type 2 diabetes mellitus.

Entities:  

Keywords:  16S rRNA gene sequencing; metagenomics; oral microbiome; periodontitis; type 2 diabetes mellitus

Year:  2021        PMID: 33922308     DOI: 10.3390/pathogens10050504

Source DB:  PubMed          Journal:  Pathogens        ISSN: 2076-0817


  71 in total

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Journal:  Bioinformatics       Date:  2015-10-29       Impact factor: 6.937

Review 2.  The therapeutic potential of manipulating gut microbiota in obesity and type 2 diabetes mellitus.

Authors:  R S Kootte; A Vrieze; F Holleman; G M Dallinga-Thie; E G Zoetendal; W M de Vos; A K Groen; J B L Hoekstra; E S Stroes; M Nieuwdorp
Journal:  Diabetes Obes Metab       Date:  2011-11-22       Impact factor: 6.577

3.  Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity.

Authors:  Stanislav S Terekhov; Ivan V Smirnov; Anastasiya V Stepanova; Tatyana V Bobik; Yuliana A Mokrushina; Natalia A Ponomarenko; Alexey A Belogurov; Maria P Rubtsova; Olga V Kartseva; Marina O Gomzikova; Alexey A Moskovtsev; Anton S Bukatin; Michael V Dubina; Elena S Kostryukova; Vladislav V Babenko; Maria T Vakhitova; Alexander I Manolov; Maja V Malakhova; Maria A Kornienko; Alexander V Tyakht; Anna A Vanyushkina; Elena N Ilina; Patrick Masson; Alexander G Gabibov; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-15       Impact factor: 11.205

4.  Bacterial diversity in human subgingival plaque.

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Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

5.  Global metabolomic analysis of human saliva and plasma from healthy and diabetic subjects, with and without periodontal disease.

Authors:  Virginia M Barnes; Adam D Kennedy; Fotinos Panagakos; William Devizio; Harsh M Trivedi; Thomas Jönsson; Lining Guo; Shannon Cervi; Frank A Scannapieco
Journal:  PLoS One       Date:  2014-08-18       Impact factor: 3.240

6.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

7.  Oral microbiome of deep and shallow dental pockets in chronic periodontitis.

Authors:  Xiuchun Ge; Rafael Rodriguez; My Trinh; John Gunsolley; Ping Xu
Journal:  PLoS One       Date:  2013-06-06       Impact factor: 3.240

8.  phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.

Authors:  Paul J McMurdie; Susan Holmes
Journal:  PLoS One       Date:  2013-04-22       Impact factor: 3.240

9.  Ultrahigh-throughput functional profiling of microbiota communities.

Authors:  Stanislav S Terekhov; Ivan V Smirnov; Maja V Malakhova; Andrei E Samoilov; Alexander I Manolov; Anton S Nazarov; Dmitry V Danilov; Svetlana A Dubiley; Ilya A Osterman; Maria P Rubtsova; Elena S Kostryukova; Rustam H Ziganshin; Maria A Kornienko; Anna A Vanyushkina; Olga N Bukato; Elena N Ilina; Valentin V Vlasov; Konstantin V Severinov; Alexander G Gabibov; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-04       Impact factor: 11.205

10.  MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.

Authors:  Dongwan D Kang; Feng Li; Edward Kirton; Ashleigh Thomas; Rob Egan; Hong An; Zhong Wang
Journal:  PeerJ       Date:  2019-07-26       Impact factor: 2.984

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  4 in total

Review 1.  The role of oral microbiome in periodontitis under diabetes mellitus.

Authors:  Han Qin; Guangyue Li; Xiaohui Xu; Chuangwei Zhang; Wenjie Zhong; Shihan Xu; Yuanyuan Yin; Jinlin Song
Journal:  J Oral Microbiol       Date:  2022-06-03       Impact factor: 5.833

2.  Cross-Cohort Microbiome Analysis of Salivary Biomarkers in Patients With Type 2 Diabetes Mellitus.

Authors:  Chuqi Gao; Ying Guo; Feng Chen
Journal:  Front Cell Infect Microbiol       Date:  2022-01-25       Impact factor: 5.293

3.  Salivary Microbiome Profile of Diabetes and Periodontitis in a Chinese Population.

Authors:  Chunting Lu; Qingtong Zhao; Jianwen Deng; Kexiao Chen; Xinrong Jiang; Fengyu Ma; Shuyuan Ma; Zejian Li
Journal:  Front Cell Infect Microbiol       Date:  2022-08-01       Impact factor: 6.073

Review 4.  Pyroptosis in periodontitis: From the intricate interaction with apoptosis, NETosis, and necroptosis to the therapeutic prospects.

Authors:  Xiaohui Xu; Tingwei Zhang; Xuyun Xia; Yuanyuan Yin; Sihan Yang; Dongqing Ai; Han Qin; Mengjiao Zhou; Jinlin Song
Journal:  Front Cell Infect Microbiol       Date:  2022-08-16       Impact factor: 6.073

  4 in total

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