Massimiliano Curcio1,2, Federico Nicoli1,2, Erica Paltrinieri1,2, Ettore Fois3, Gloria Tabacchi3, Luigi Cavallo4, Serena Silvi2,5, Massimo Baroncini2,6, Alberto Credi1,2. 1. Dipartimento di Chimica Industriale "Toso Montanari", Università di Bologna, Bologna 40136, Italy. 2. Center for Light Activated Nanostructures, Istituto ISOF-CNR, Bologna 40129, Italy. 3. Dipartimento di Scienza e Alta Tecnologia, Università dell'Insubria, Como 22100, Italy. 4. Kaust Catalysis Center, Physical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia. 5. Dipartimento di Chimica "Giacomo Ciamician", Università di Bologna, Bologna 40126, Italy. 6. Dipartimento di Scienze e Tecnologie Agro-alimentari, Università di Bologna, Bologna 40127, Italy.
Abstract
The mechanical interlocking of molecular components can lead to the appearance of novel and unconventional properties and processes, with potential relevance for applications in nanoscience, sensing, catalysis, and materials science. We describe a [3]rotaxane in which the number of recognition sites available on the axle component can be changed by acid-base inputs, encompassing cases in which this number is larger, equal to, or smaller than the number of interlocked macrocycles. These species exhibit very different properties and give rise to a unique network of acid-base reactions that leads to a fine pKa tuning of chemically equivalent acidic sites. The rotaxane where only one station is available for two rings exhibits a rich coconformational dynamics, unveiled by an integrated experimental and computational approach. In this compound, the two crown ethers compete for the sole recognition site, but can also come together to share it, driven by the need to minimize free energy without evident inter-ring interactions.
The mechanical interlocking of molecular components can lead to the appearance of novel and unconventional properties and processes, with potential relevance for applications in nanoscience, sensing, catalysis, and materials science. We describe a [3]rotaxane in which the number of recognition sites available on the axle component can be changed by acid-base inputs, encompassing cases in which this number is larger, equal to, or smaller than the number of interlocked macrocycles. These species exhibit very different properties and give rise to a unique network of acid-base reactions that leads to a fine pKa tuning of chemically equivalent acidic sites. The rotaxane where only one station is available for two rings exhibits a rich coconformational dynamics, unveiled by an integrated experimental and computational approach. In this compound, the two crown ethers compete for the sole recognition site, but can also come together to share it, driven by the need to minimize free energy without evident inter-ring interactions.
Mechanically interlocked
molecules (MIMs) such as rotaxanes have
gained considerable attention over the past three decades because
of their intriguing structural and dynamic properties[1,2] and, in more recent years, for their application in key areas such
as dyes,[3] ion recognition[4] and transport,[5] catalysis,[6,7] molecular electronics,[8,9] structural and functional
materials,[10−14] molecular machines,[15−17] and nanomedicine.[18]Most often, the functions brought about by rotaxanes take advantage
of a precise relative arrangement of the ring and axle components,
which can be engineered through chemical design and potentially controlled
by external stimuli. These goals are typically achieved by introducing
recognition sites (stations) on the axle component
in order to establish noncovalent interactions with the macrocycle(s).
The presence of stations can be a requirement to template the formation
of the MIM,[1,2,19] although strategies
that do not require permanent recognition motifs on the components
to be interlocked have been developed.[20]The balance between the number of stations (nS) and of rings (nR) in a
rotaxane
is a primary design element that leads to very different properties,
as shown schematically in Figure a–c for a [2]rotaxane.
Figure 1
Cartoon representation
of [2]rotaxanes (left) and [3]rotaxanes
(right) in which the number of recognition sites, or stations (nS), is respectively (a, d) equal to, (b, e)
higher than, and (c, f) lower than the number of macrocyclic rings
(nR). The blue arrows in b and c highlight
the kind of translational movements that are typically observed in
these rotaxanes.
Cartoon representation
of [2]rotaxanes (left) and [3]rotaxanes
(right) in which the number of recognition sites, or stations (nS), is respectively (a, d) equal to, (b, e)
higher than, and (c, f) lower than the number of macrocyclic rings
(nR). The blue arrows in b and c highlight
the kind of translational movements that are typically observed in
these rotaxanes.A common case is when nS = nR (Figure a), that is, the
ring sits on the sole recognition
site present on the axle; in a rotaxane with more than one ring, it
means that there is one station available to each ring. Also popular
is the instance when nS > nR (Figure b); this is the case of molecular shuttles, where the translational
movement of the ring between the stations can occur either randomly
or under the control of physical or chemical stimuli.[1,2,4−6,8,9,14,16,18]Much less investigated is the case in which nS < nR, i.e.,
there are not enough stations for the rings; in a [2]rotaxane, this
means that the axle contains no recognition sites (i.e., nS = 0; Figure c). Such a scenario
is particularly intriguing because the relative arrangement of the
components is not dominated by strong intermolecular interactions,
and peculiar structural and/or dynamic effects purely arising from
the mechanical bond could emerge.[21−25]Such a condition is even more interesting for
[3]rotaxanes that
comprise two rings encircling the same axle, as it can be fulfilled
with nS ≠ 0; in other words, a
MIM could be obtained in which there is only one station available
to two rings (Figure f). This “frustrated” state could lead to novel coconformational
phenomena that range from exclusive competition of the rings for the
station in a highly dynamic fashion to an arrangement in which the
two rings come together to both interact with the station[26] without necessarily interacting with each other
as observed in previously studied [3]rotaxanes.[27−29] Obviously,
[3]rotaxanes characterized by nS > nR (Figure e) and nS = nR (Figure d) can also be obtained.The efficient synthetic routes available
nowadays in rotaxane chemistry
allow a rational approach to this issue by designing modular [3]rotaxanes
where the proportion between rings and stations can not only be predetermined,
but also varied on command. We thus prepared [3]rotaxane RotH23+ (Scheme ), which consists of two identical dibenzo-24-crown-8
(DB24C8) rings interlocked with an axle containing two lateral dibenzylammonium
(Am) and one central triazolium (Tz) stations. On the basis of published
data,[4,30,31] it is expected
that each DB24C8 ring encircles an Am station on account of strong
hydrogen bonding. The Am stations, however, can be deactivated by
deprotonation,[4,30] affording rotaxanesRotH2+ and Rot+. The former, because
of the nonsymmetric structure of the axle, can exist in two nonequivalent
isomers that differ for the position of the sole ammonium site and
its surrounding ring on the axle. Therefore, we envisioned that acid–base
reactions performed on RotH23+ could
enable the reversible interconversion between the structures shown
in Figure def, as
shown in Scheme .
Scheme 1
Structural Formulas and Acid–Base Triggered Interconversion
of the [3]rotaxanes Studied in This Work
A number of interesting issues can arise from the investigation
of such a switchable [3]rotaxane, namely: (i) Considering that the
apparent pKa of the Am site depends on
whether it is encircled by the ring,[32−34] how does the rotaxane
behave upon treatment with a base? (ii) What are the properties of
the isomers of RotH2+, and how are they interconverted?
(iii) What are the structural and dynamic properties of the fully
deprotonated rotaxane in which only the Tz station is available to
the two DB24C8 rings?Here we try to answer these questions
by a combination of NMR spectroscopy,
UV–visible spectroscopy and computational techniques applied
to the [3]rotaxanes and appropriate model compounds. Our prime aim
is to shine light on unconventional (and for some aspects unique)
chemical reactions that can occur in rotaxanes, which may extend the
range of interest and application of these MIMs. Another objective
is to gather information on switchable [3]rotaxanes of higher complexity
than [2]rotaxane-based molecular shuttles, which despite their huge
potential[2]- and [3]Rotaxane
Molecular Shuttles with Benzimidazolium and Bis(pyridinium) Recognition
Sites. Chem. - Asian J.. 2016 ">35,3]Rotaxane. Nat. Chem.. 2018 ">36] are yet scarcely investigated.[37] A long-term goal of this work is the development
of more complex mechanical nanodevices such as a multistate molecular
abacus.
Results and Discussion
The target compound of this
study is the [3]rotaxane RotH23+, provided with two switchable ammonium
stations and one permanent triazolium station. The symmetric structure
of the rotaxane enables a straightforward convergent synthetic approach
starting from the readily available Boc-protected species 1 (Scheme ), which
is converted through a sequence of functional group exchange reactions
into the building blocks of the axle. The rotaxane formation relies
on the copper(I)-catalyzed azide–alkyne cycloaddition reaction
between 6 and 3 in the presence of the crown
etherdibenzo-24-crown-8, affording the dicationic [3]rotaxane 7·2HPF6 in good yield. Reaction of 7·2HPF6 with iodomethane followed by anion exchange provides
the desired tricationic rotaxane.
Scheme 2
Synthetic Route to the [3]rotaxane RotH23+: (i) BrCH2CCH, K2CO3, MeCN;
(ii) HPF6, THF; (iii) BrC2H4Br, K2CO3, MeCN; (iv) NaN3, DMF; (v) HPF6, THF; (vi) DB24C8, [(MeCN)4Cu][PF6],
CH2Cl2; (vii) MeI, KPF6
RotH23+ was
characterized by
mass spectrometry and NMR experiments, allowing for the assignment
of all 1H and 13C resonances. The most relevant
signals in the 1H NMR spectrum of RotH23+ (Figure a) are (i) the sharp singlet at 8.6 ppm, related to the Tz
aromatic C–H, and (ii) the peaks in the region between 4.5
and 4.8 ppm, assigned to the benzylic protons exhibiting the characteristic
multiplicity of Am stations complexed by crown ether rings.[38]
Figure 2
1H NMR spectra (500 MHz, CD2Cl2, 298 K) of (a) trication RotH23+ (red trace) and the species observed upon deprotonation
with the
heterogeneous phosphazene base B1: (b) mixture of dications RotH2+-I and RotH2+-II
(blue trace), and (c) monocation Rot+ (green
trace). The peak marked with an asterisk is due to the residual solvent.
1H NMR spectra (500 MHz, CD2Cl2, 298 K) of (a) trication RotH23+ (red trace) and the species observed upon deprotonation
with the
heterogeneous phosphazenebase B1: (b) mixture of dications RotH2+-I and RotH2+-II
(blue trace), and (c) monocation Rot+ (green
trace). The peak marked with an asterisk is due to the residual solvent.
Base-Induced Switching
The tricationic rotaxaneRotH23+ presents two ammonium stations
that can be deactivated by the addition of a suitable base. The behavior
of RotH23+ toward deprotonation
was investigated by 1H NMR spectroscopy throughout the
sequential addition of the heterogeneous phosphazenebase B1 (polystyrene-supported BEMP, see the Supporting Information). As the reaction proceeds, two new products are
formed as unambiguously indicated by the two independent sets of signals,
each containing a triazolium-related peak (HTz, Figure and Figure S37). The considerable downfield shift
displayed by these peaks, moving from 8.60 ppm in RotH23+ to 9.35 and 9.21 ppm, is attributed to
the complexation of the Tz cation by a crown ether ring upon deactivation
of one of the Am stations.[39] The two new
patterns persist until the full conversion of the starting rotaxaneRotH23+ (addition of one equivalent
of B1, Figure b) and are as such assigned to the two isomers RotH2+-I and RotH2+-II, formed upon
monodeprotonation of the parent compound RotH23+. The stoichiometric deprotonation of the rotaxane performed
with the heterogeneous base B1 was validated with a control
experiment carried out in homogeneous solution by adding 1 equiv.
of the phosphazenebaseP1-tert-butyl
(B2, see the Supporting Information) under the same reaction conditions (Figure S38). The existence of the two species RotH2+-I and RotH2+-II derives from the
quasi-symmetry of the axle, which imparts a nonequivalent nature to
the two ammonium stations located on each side of the central triazolium
cation in RotH23+. The identity
of the dicationic rotaxanes was assigned in accordance with their
DFT-computed relative stabilities (vide infra).It is important
to note that the RotH2+-I/RotH2+-II ratio is 30:70; it does not change over time, and
it remains the same throughout the whole stepwise deprotonation up
to the addition of 1 equiv. of base. Such observations suggest that
the two species are in thermodynamic equilibrium and possess different
stabilities. On the other hand, forms I and II of RotH2+ exhibit distinct signals in the 1H NMR
spectra, indicating that the exchange between the two species is slow
on the NMR time scale. Indeed, EXSY experiments performed on monodeprotonated RotH23+ (Figure S40) confirm the presence of an active exchange pathway between RotH2+-I and RotH2+-II,
which takes place with a rate constant of 2.2 s–1.Starting from the mixture of RotH2+-I and RotH2+-II, further deprotonation with
a second
equivalent of B1 produces the monocation Rot+ as the only product, confirming the correct assignment
of the two dicationic intermediates through their convergent reactivity
(Figure c). The complete
deprotonation of RotH23+ into Rot+ causes significant shifts in the related 1H NMR spectra (Figure ). In particular, a deshielding is observed for all the signals
related to the nuclei placed around the Tz core, whereas the Tz aryl
peak remains almost unaltered and the Tz methyl group becomes shielded
by 0.88 ppm.[31,40,41] These changes suggest that in Rot+ both
rings have moved toward the central triazolium station, with neither
of them overtaking it.
Figure 3
1H NMR chemical shift variations upon deprotonation
of RotH23+ into Rot+ (500 MHz, CD2Cl2, 298 K). The
Δδ values in red and blue correspond to shielding and
deshielding effects, respectively. For clarity, the two DB24C8 rings
and the anion have been omitted.
1H NMR chemical shift variations upon deprotonation
of RotH23+ into Rot+ (500 MHz, CD2Cl2, 298 K). The
Δδ values in red and blue correspond to shielding and
deshielding effects, respectively. For clarity, the two DB24C8 rings
and the anion have been omitted.The nucleophilic amine sites generated upon deprotonation are in
principle available for functionalization. Thus, compound Rot+ was reacted with di-tert-butyl dicarbonate,
accessing the bis-carbamateRotBoc2+ (Figure S41). The 1H NMR spectrum
of RotBoc2+ shows a set of peaks
that is almost unchanged compared to the one observed in Rot+, except for the peaks directly influenced by the newly
formed carbamate group. The close similarity of the NMR spectra of
the deprotonated and Boc-protected rotaxanes confirms that in Rot+ the rings have moved away from the amine sites.
The effortless attainment of RotBoc2+ is also an indirect evidence for the translation of the crown ether
rings toward the center of the rotaxane in Rot+, as it is well-known that reactivity of functional groups encircled
by a macrocycle in a rotaxane can be hindered.[21,32,42,43]
Thermodynamic
Analysis of Deprotonation
Hydrogen bonding
interactions established between a crown ether ring and an ammonium
station have a considerable impact on the thermodynamic properties
of the latter. Upon complexation, the acidity of the ammonium cation
dramatically decreases,[32−34] reaching pKa values commonly associated with much weaker acids like guanidinium
and phosphazenium cations.[44] The different
ring dispositions observed in RotH23+, RotH2+, and Rot+ are thus expected to confer distinct thermodynamic features to the
four kinds of ammonium stations—on the side of the ethylene
or methylene bridge, free or complexed—comprised in these rotaxanes.
We exploited NMR and UV–vis spectroscopies to investigate this
peculiar situation in acetonitrile.The interconversion between
the different protonated forms of the rotaxanes occurs through a network
of acid–base equilibria, characterized by the acidity constants K1–K4, and
the exchange between the dications RotH2+-I
and RotH2+-II, regulated by the equilibrium
constant Kex (Figure ). The value of Kex was inferred from the NMR spectra, and the values of K1–K4 were calculated
by solving the equations that describe the reaction network at equilibrium
(Figure S47), using the spectrophotometric
titration data with the phosphazeneB2 (Figures S45–S46) whose acidity constant in acetonitrile
is known.[45]
Figure 4
Schematic representation
of the equilibria involved in the interconversion
between RotH23+, RotH2+ (I and II), and Rot+.
Schematic representation
of the equilibria involved in the interconversion
between RotH23+, RotH2+ (I and II), and Rot+.The trication RotH23+ undergoes
deprotonation to yield the two isomers RotH2+-I and RotH2+-II with pK1 = 23.5 and pK2 = 23.2, respectively;
successive deprotonation of these two forms affords the monocation Rot+ with pK3 = 24.2
and pK4 = 24.5, respectively. It must
be first emphasized that the supramolecular coordination of the rings
in the rotaxane is necessary to express the difference between the
acidity constants of the two ammonium sites.These units are
not chemically identical in the axle because of
the uneven lengths of the alkyl bridges on either side of the triazolium
cation and the orientation of the latter; in the free axle, however,
the two monodeprotonated species are in fast exchange and cannot be
individually detected (Figure S42). The
ringless compound 9 therefore has to be treated as a
simple diprotic acid whose dissociation constants were determined
as pK1′ = 16.9 and pK2′ = 17.5 (Figure S46). Conversely, as noted in the previous paragraph, the two monodeprotonated
forms of the rotaxane are in slow equilibrium on the 1H
NMR time scale. Most likely, the proton exchange in the rotaxane is
slow because (i) the removal of a proton from the complexed ammonium
station is kinetically hindered, and/or (ii) the proton exchange between
forms I and II involves the displacement of two rings (Figure ). In the rotaxane, the two
ammonium units not only become much harder to deprotonate because
of the rings encircling them but also exhibit clearly different pKa values; namely, the ammonium on the ethylene
bridge side is about two times easier to deprotonate than that on
the other side.Another significant result is that the presence
of a ring on the
triazolium cation affects the acidity of the nearby complexed ammonium
station, as, for instance, observed by comparing K1 and K4. Although the local
chemical environment of the ammonium site on the methylene bridge
side of RotH23+ and RotH2+-II is the same, it can be argued that in RotH2+-II the steric interaction between the ring on the
triazolium and that on the ammonium disfavors the shuttling of the
latter, thus making the station less acidic (K4 < K1). A similar consideration
can be done for the ammonium station on the ethylene bridge side by
comparing the values of K2 and K3. The fact that the magnitude of this effect
(ΔpKa = 1.0 units for both ammonium
sites) exceeds the pKa difference of the
two successive deprotonations of the free axle (ΔpKa = 0.6 units) highlights the peculiar role of the mobile
macrocycles in the acid–base equilibrium network.
Variable-Temperature
NMR
The cation Rot+ is a unique rotaxane
in which two crown ethers share
a single triazolium station. We envisaged that the weak ion-dipole
interaction holding the macrocycles close to the station would create
a highly dynamic system; we therefore investigated the behavior of
the crown ether rings in Rot+ by means of
variable-temperature NMR analysis in acetonitrile (Figure and S43). As a result of its anticipated dynamic nature, large spectral
variations are observed in 1H NMR VT experiments performed
on Rot+. In particular, the observed shielding
upon temperature increase of the resonances on the methylene bridge
side (H5), together with the deshielding of the resonances
on the ethylene bridge side (H1, H2) are indicative
of a concomitant shuttling of the rings toward the ethylene bridge.
Additionally, the minor changes in chemical shift observed for the
ethylene bridge protons H3 and the methylene bridge protons
H4 imply that these atoms are subjected to a similar local
environment at different temperatures. More insight is provided by
the variation of the triazoliumC–H peak (HTz, Figure b): in contrast to
the unidirectional trends mentioned above, the triazolium peak undergoes
an initial shielding, shifting from 9.04 ppm at 233 K to 8.73 ppm
at 313 K. An additional increase in temperature, however, does not
lead to further shielding; instead, a low-field shift up to 8.76 ppm
is observed at 343 K. Such unusual behavior is indicative of a multimodal
dynamic system involving multiple coconformations, whose population
distribution is temperature dependent. Similarly to the properties
emerged from the deprotonation study, this peculiar temperature-dependent
behavior arises from the displacement of the rings along the axle,
as confirmed by the fact that variable-temperature experiments on
the free monocationic axle display only unidirectional chemical shift
variations (Figure S44). More information
on this point was gained from molecular modeling studies.
Figure 5
(a) Portion
of the variable-temperature 1H NMR spectra
of Rot+ (500 MHz, CD3CN). (b) Magnification
of the chemical shift variation of the triazolium peak HTz. For peak assignment refer to Figure .
(a) Portion
of the variable-temperature 1H NMR spectra
of Rot+ (500 MHz, CD3CN). (b) Magnification
of the chemical shift variation of the triazolium peak HTz. For peak assignment refer to Figure .
Molecular Modeling
Atomistic-level insight on the structure,
the thermodynamics and the kinetics of the different [3]rotaxanesRotH23+, RotH2+-I, RotH2+-II, and Rot+ was provided by density functional theory (DFT) modeling.[46,47] Whereas the instances where nS ≥ nR were tackled via geometry optimizations, the
case where nR > nS (i.e., Rot+) was investigated via
a finite temperature DFT-metadynamics approach (see the Supporting Information for an account of the
computational approaches).[48−52] Indeed, in the Rot+ case, a competition
can be foretold for the two DB24C8 macrocycles to approach the only
charged station in the axle, which could lead to a highly dynamic
“frustrated” system.We first analyzed the nS ≥ nR cases.
In RotH23+ the rings are located
on the two ammonium stations (Figure S49), in agreement with the experimental results. The two dicationic
[3]rotaxanes, RotH2+-I and RotH2+-II, feature one macrocycle on the protonated Am station,
whereas the other ring encircles the Tz station in the center of the
axle (Figures S50 and S51). RotH2+-II is more stable by 1.4 kcal mol–1 with respect to RotH2+-I (≈2kT at room temperature). The calculated NMR chemical shifts
for both dications are compared with those for the RotH23+ trication in Figure S52. The calculations reproduce fairly well the chemical shift
trend of the triazolium proton HTz in the first deprotonation
step (RotH23+ → RotH2+-I and RotH2+-II), confirming
that the stable occupation of the Tz station by one DB24C8 macrocycle
causes a significant change in the HTz chemical shift.We expect a more complex behavior for Rot+ because two macrocycles are competing for the sole station (Tz)
remained on the axle. The free energy profile for the shuttling of
the two macrocycles with respect to the central triazolium site is
shown in Figure .
Because of the large dimensions of the system, this profile was calculated
in vacuum, hence the predicted barriers are higher than the real ones.
However, previous studies on rotaxanes indicated that although the
inclusion of solvent molecules decreases the barriers by about 15
kcal mol–1, the transition state structures do not
change appreciably with respect to vacuum calculations.[53] Therefore, although we acknowledge that all
barriers are quantitatively overestimated, we are confident that the
free energy path provides a qualitatively correct picture of the shuttling
process. The profile displays three free energy wells with comparable
depth characterized by a very different mutual arrangement of the
molecular components.
Figure 6
Free energy profile (kcal mol–1) for
the shuttling
of the two macrocycles along the axle in Rot+. The collective variable CV (in Å) represents the displacement
of the ethereal oxygen atoms of the two rings with respect to the
Tz nitrogen atoms (see the Supporting Information for details). The three different coconformations of Rot+ characterized by deep free energy minima are labeled
A, B, and C.
Free energy profile (kcal mol–1) for
the shuttling
of the two macrocycles along the axle in Rot+. The collective variable CV (in Å) represents the displacement
of the ethereal oxygen atoms of the two rings with respect to the
Tznitrogen atoms (see the Supporting Information for details). The three different coconformations of Rot+ characterized by deep free energy minima are labeled
A, B, and C.Typical structures representative
of the three minima are shown
in Figure . In structure
A, one macrocycle is located close to the Tz station and the other
one is on the ethylene bridge side. In structure B, both macrocycles
are close to the central Tz station. In structure C, one DB24C8 ring
is close to the central Tz station and the other ring sits on the
methylene bridge side. The profile in Figure highlights a significantly lower barrier
for the B → C path with respect to the B → A one. Such
a multiwell free energy profile can explain the unusual temperature-dependent
behavior of Rot+ as detected by VT-NMR analysis.
Figure 7
Graphical
representations of the three coconformations extracted
from the combined Metadynamics-DFT simulation of Rot+ at room temperature. The reported coconformations are representative
of the three free energy minima labeled A, B, and C in Figure . Color code: C, cyan; N, blue;
O, red; H, white. The corresponding structural formulas are also shown
for clarity.
Graphical
representations of the three coconformations extracted
from the combined Metadynamics-DFT simulation of Rot+ at room temperature. The reported coconformations are representative
of the three free energy minima labeled A, B, and C in Figure . Color code: C, cyan; N, blue;
O, red; H, white. The corresponding structural formulas are also shown
for clarity.At low temperatures, the most
stable structure C is predominant,
whereas at intermediate temperatures, both C and B are present in
comparable concentrations. The population increase of structure A
requires higher temperatures because A is less stable than B and C.
This hypothesis is supported by the calculated chemical shift of the
triazolium proton HTz, which indicates a deshielding for
structure C, a moderate shielding for structure B, and again, a deshielding
for structure A (Figure S53), in agreement
with the experimental VT-NMR data (Figure b). In fact, Figure indicates that a macrocycle encircling the
central Tz station like in RotH2+-I and RotH2+-II causes a pronounced deshielding of the
triazolium proton HTz. On the contrary, the chemical shift
decreases when the Tz proton is far away from the ethereal oxygen
atoms of a DB24C8 macrocycle, like in RotH23+ (Figure S49). In both A
and C, a macrocycle is very close to the Tz station, hence the HTz proton is deshielded. Conversely, in structure B, both macrocycles
are relatively distant from the Tz central station, and the signal
calculated for the HTz proton is not deshielded.The much higher barrier for the B → A path than for the
B → C one suggests that directionally controlled shuttling
motion could in principle be achieved in triazolium-based rotaxanes.
Because of the intrinsic asymmetry of the Tz group, which can be approximated
to a flat rigid section bearing an off-axis methyl, the macrocycle
transit can occur by two nonequivalent paths (Figure ).
Figure 8
Ball-and-stick representation of a triazolium
unit encircled by
a macrocycle (red oval). Color code: C, cyan; N, blue; H, white. The
red arrows represent two nonequivalent shuttling directions for the
macrocycle.
Ball-and-stick representation of a triazolium
unit encircled by
a macrocycle (red oval). Color code: C, cyan; N, blue; H, white. The
red arrows represent two nonequivalent shuttling directions for the
macrocycle.The difference in free energy
for the B → A transit with
respect to the B → C one can be related to such an asymmetry.
In particular, in the B → C case, a macrocycle should first
pass over the flat rigid part of the Tz, thus hindering the Tz rotation
(left-hand side in Figures and 9). As a consequence, the passage
is easier and the B → C transit can be completed at a lower
free energy cost (Figure , lower panels). On the other hand, in the B → A case,
the macrocycle should first impact with the bulkier methyl group,
causing a rotation of the Tz along the Cα-Cβ single bond (right-hand side in Figures and 9). As a result,
the transit of the macrocycle is hampered by the Tz rotation and hence
is accomplished at a greater free energy cost (Figure , upper panels).
Figure 9
Snapshots taken from
the DFT-metadynamics simulation of Rot+. Top
panels: right-to-left transit of a DB24C8 macrocycle
over the Tz station, describing the B → A path. Bottom panels:
left-to-right transit of a DB24C8 macrocycle over the Tz station,
describing the B → C path. Color code: H, white; N, blue; O,
red. C atoms belonging to the axle in gray, C atoms belonging to the
DB24C8 rings in yellow, C atoms of the triazolium group in orange.
Atoms of the axle are represented as spheres, atoms of the macrocycles
are represented as sticks.
Snapshots taken from
the DFT-metadynamics simulation of Rot+. Top
panels: right-to-left transit of a DB24C8 macrocycle
over the Tz station, describing the B → A path. Bottom panels:
left-to-right transit of a DB24C8 macrocycle over the Tz station,
describing the B → C path. Color code: H, white; N, blue; O,
red. C atoms belonging to the axle in gray, C atoms belonging to the
DB24C8 rings in yellow, C atoms of the triazolium group in orange.
Atoms of the axle are represented as spheres, atoms of the macrocycles
are represented as sticks.Movies S1–S3 show that such a mechanism, previously detected for the
transit of a DB24C8 macrocycle over a different pseudostopper,[53] is operative also in the B → A path described
here. The rotation of Tz during the transit is accompanied by low-energy
synchronous vibrations of the crown ether ring, which provide the
appropriate deformation needed to accomplish the shuttling.[53] In particular, Movie S1 highlights that a rotation of nearly 90° of the Tz moiety occurs
along the B → A path, whereas no similar rotation of the Tz
group has been detected during the B → C transit (Movie S3). Finally, Movie S2 illustrates the proximity of the rings to share the complexation
of the triazolium station.
Conclusion
We
have designed and investigated a [3]rotaxane that contains two
acid–base-switchable ammonium sites and an acid–base-insensitive
triazolium unit, giving access to a family of rotaxanes whose members
– RotH23+, RotH2+, and Rot+ – contain
a number of recognition sites (nS) respectively
larger than, equal to, or lower than the number of interlocked macrocyclic
rings (nR).Detailed spectroscopic
studies and DFT-metadynamics calculations
showed that these molecules exhibit markedly different structural
and dynamic properties. In RotH23+, the two crown ethers encircle the ammonium stations, making them
harder to deprotonate by a base in solution; moreover, they exhibit
different pKa values because of the inherent
asymmetry of the axle. RotH2+ can exist in
two nonequivalent isomeric forms that differ for the position of the
ammonium site (and of its surrounding macrocycle) with respect to
the central triazolium. Although in the free axle these two isomers
are in fast equilibrium and could not be individually observed, in
the rotaxane the proton exchange between the isomers becomes slow
due to the presence of the rings. Hence, the two forms of RotH2+ could be studied, and the peculiar effect of the moving
rings on the acidity of the ammonium sites has been thoroughly characterized.The fully deprotonated species Rot+ has nS < nR, that
is, there is only one recognition site for two rings. Such an arrangement
is very rare, despite the large number of studies on rotaxanes available
in the literature. Our expectation that a situation of this kind could
lead to a frustrated, highly dynamic system was confirmed by variable-temperature
NMR studies. We employed computational modeling to identify the stable
coconformations available to the rotaxane and to simulate their NMR
spectra; this approach enabled us to interpret the nontrivial spectroscopic
results and understand the dynamic properties of Rot+. Not unexpectedly, stable coconformations of this rotaxane
consist of one macrocycle catching the triazolium station with the
other ring located in the vicinity. However, a deep energy minimum
in which the two crown ethers are very close together and share the
recognition site was also identified. Another significant observation
is that the barrier for the transit of a macrocycle over the triazolium
unit is different depending on the approaching direction along the
axle, because of the presence of the asymmetrically positioned methyl
substituent.This study shows that interesting and unusual thermodynamic
and
kinetic phenomena can emerge by interlocking multiple macrocyclic
rings with a molecular axle and inducing a mismatch between rings
and stations. The fact that the investigated compounds are based on
simple molecular components (DB24C8 is commercially available) and
a well-established chemistry makes them even more valuable[54] and is a useful premise for extending the study
to higher-order rotaxanes. Research in this direction is important
to foster the use of MIMs with designed physicochemical and mechanical
properties as components of functional nanostructured devices and
materials.
Authors: Marcel Dommaschk; Javier Echavarren; David A Leigh; Vanesa Marcos; Thomas A Singleton Journal: Angew Chem Int Ed Engl Date: 2019-09-10 Impact factor: 15.336
Authors: Victor Blanco; David A Leigh; Vanesa Marcos; José A Morales-Serna; Alina L Nussbaumer Journal: J Am Chem Soc Date: 2014-03-24 Impact factor: 15.419
Authors: Oleg Borodin; Yevhenii Shchukin; Craig C Robertson; Stefan Richter; Max von Delius Journal: J Am Chem Soc Date: 2021-09-24 Impact factor: 15.419