Literature DB >> 33915051

Chemically Induced Mismatch of Rings and Stations in [3]Rotaxanes.

Massimiliano Curcio1,2, Federico Nicoli1,2, Erica Paltrinieri1,2, Ettore Fois3, Gloria Tabacchi3, Luigi Cavallo4, Serena Silvi2,5, Massimo Baroncini2,6, Alberto Credi1,2.   

Abstract

The mechanical interlocking of molecular components can lead to the appearance of novel and unconventional properties and processes, with potential relevance for applications in nanoscience, sensing, catalysis, and materials science. We describe a [3]rotaxane in which the number of recognition sites available on the axle component can be changed by acid-base inputs, encompassing cases in which this number is larger, equal to, or smaller than the number of interlocked macrocycles. These species exhibit very different properties and give rise to a unique network of acid-base reactions that leads to a fine pKa tuning of chemically equivalent acidic sites. The rotaxane where only one station is available for two rings exhibits a rich coconformational dynamics, unveiled by an integrated experimental and computational approach. In this compound, the two crown ethers compete for the sole recognition site, but can also come together to share it, driven by the need to minimize free energy without evident inter-ring interactions.

Entities:  

Year:  2021        PMID: 33915051      PMCID: PMC8176457          DOI: 10.1021/jacs.1c02230

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


Introduction

Mechanically interlocked molecules (MIMs) such as rotaxanes have gained considerable attention over the past three decades because of their intriguing structural and dynamic properties[1,2] and, in more recent years, for their application in key areas such as dyes,[3] ion recognition[4] and transport,[5] catalysis,[6,7] molecular electronics,[8,9] structural and functional materials,[10−14] molecular machines,[15−17] and nanomedicine.[18] Most often, the functions brought about by rotaxanes take advantage of a precise relative arrangement of the ring and axle components, which can be engineered through chemical design and potentially controlled by external stimuli. These goals are typically achieved by introducing recognition sites (stations) on the axle component in order to establish noncovalent interactions with the macrocycle(s). The presence of stations can be a requirement to template the formation of the MIM,[1,2,19] although strategies that do not require permanent recognition motifs on the components to be interlocked have been developed.[20] The balance between the number of stations (nS) and of rings (nR) in a rotaxane is a primary design element that leads to very different properties, as shown schematically in Figure a–c for a [2]rotaxane.
Figure 1

Cartoon representation of [2]rotaxanes (left) and [3]rotaxanes (right) in which the number of recognition sites, or stations (nS), is respectively (a, d) equal to, (b, e) higher than, and (c, f) lower than the number of macrocyclic rings (nR). The blue arrows in b and c highlight the kind of translational movements that are typically observed in these rotaxanes.

Cartoon representation of [2]rotaxanes (left) and [3]rotaxanes (right) in which the number of recognition sites, or stations (nS), is respectively (a, d) equal to, (b, e) higher than, and (c, f) lower than the number of macrocyclic rings (nR). The blue arrows in b and c highlight the kind of translational movements that are typically observed in these rotaxanes. A common case is when nS = nR (Figure a), that is, the ring sits on the sole recognition site present on the axle; in a rotaxane with more than one ring, it means that there is one station available to each ring. Also popular is the instance when nS > nR (Figure b); this is the case of molecular shuttles, where the translational movement of the ring between the stations can occur either randomly or under the control of physical or chemical stimuli.[1,2,4−6,8,9,14,16,18] Much less investigated is the case in which nS < nR, i.e., there are not enough stations for the rings; in a [2]rotaxane, this means that the axle contains no recognition sites (i.e., nS = 0; Figure c). Such a scenario is particularly intriguing because the relative arrangement of the components is not dominated by strong intermolecular interactions, and peculiar structural and/or dynamic effects purely arising from the mechanical bond could emerge.[21−25] Such a condition is even more interesting for [3]rotaxanes that comprise two rings encircling the same axle, as it can be fulfilled with nS ≠ 0; in other words, a MIM could be obtained in which there is only one station available to two rings (Figure f). This “frustrated” state could lead to novel coconformational phenomena that range from exclusive competition of the rings for the station in a highly dynamic fashion to an arrangement in which the two rings come together to both interact with the station[26] without necessarily interacting with each other as observed in previously studied [3]rotaxanes.[27−29] Obviously, [3]rotaxanes characterized by nS > nR (Figure e) and nS = nR (Figure d) can also be obtained. The efficient synthetic routes available nowadays in rotaxane chemistry allow a rational approach to this issue by designing modular [3]rotaxanes where the proportion between rings and stations can not only be predetermined, but also varied on command. We thus prepared [3]rotaxane RotH23+ (Scheme ), which consists of two identical dibenzo-24-crown-8 (DB24C8) rings interlocked with an axle containing two lateral dibenzylammonium (Am) and one central triazolium (Tz) stations. On the basis of published data,[4,30,31] it is expected that each DB24C8 ring encircles an Am station on account of strong hydrogen bonding. The Am stations, however, can be deactivated by deprotonation,[4,30] affording rotaxanes RotH2+ and Rot+. The former, because of the nonsymmetric structure of the axle, can exist in two nonequivalent isomers that differ for the position of the sole ammonium site and its surrounding ring on the axle. Therefore, we envisioned that acid–base reactions performed on RotH23+ could enable the reversible interconversion between the structures shown in Figure def, as shown in Scheme .
Scheme 1

Structural Formulas and Acid–Base Triggered Interconversion of the [3]rotaxanes Studied in This Work

A number of interesting issues can arise from the investigation of such a switchable [3]rotaxane, namely: (i) Considering that the apparent pKa of the Am site depends on whether it is encircled by the ring,[32−34] how does the rotaxane behave upon treatment with a base? (ii) What are the properties of the isomers of RotH2+, and how are they interconverted? (iii) What are the structural and dynamic properties of the fully deprotonated rotaxane in which only the Tz station is available to the two DB24C8 rings? Here we try to answer these questions by a combination of NMR spectroscopy, UV–visible spectroscopy and computational techniques applied to the [3]rotaxanes and appropriate model compounds. Our prime aim is to shine light on unconventional (and for some aspects unique) chemical reactions that can occur in rotaxanes, which may extend the range of interest and application of these MIMs. Another objective is to gather information on switchable [3]rotaxanes of higher complexity than [2]rotaxane-based molecular shuttles, which despite their huge potential[2]- and [3]Rotaxane Molecular Shuttles with Benzimidazolium and Bis(pyridinium) Recognition Sites. Chem. - Asian J.. 2016 ">35,3]Rotaxane. Nat. Chem.. 2018 ">36] are yet scarcely investigated.[37] A long-term goal of this work is the development of more complex mechanical nanodevices such as a multistate molecular abacus.

Results and Discussion

The target compound of this study is the [3]rotaxane RotH23+, provided with two switchable ammonium stations and one permanent triazolium station. The symmetric structure of the rotaxane enables a straightforward convergent synthetic approach starting from the readily available Boc-protected species 1 (Scheme ), which is converted through a sequence of functional group exchange reactions into the building blocks of the axle. The rotaxane formation relies on the copper(I)-catalyzed azidealkyne cycloaddition reaction between 6 and 3 in the presence of the crown ether dibenzo-24-crown-8, affording the dicationic [3]rotaxane2HPF6 in good yield. Reaction of 7·2HPF6 with iodomethane followed by anion exchange provides the desired tricationic rotaxane.
Scheme 2

Synthetic Route to the [3]rotaxane RotH23+: (i) BrCH2CCH, K2CO3, MeCN; (ii) HPF6, THF; (iii) BrC2H4Br, K2CO3, MeCN; (iv) NaN3, DMF; (v) HPF6, THF; (vi) DB24C8, [(MeCN)4Cu][PF6], CH2Cl2; (vii) MeI, KPF6

RotH23+ was characterized by mass spectrometry and NMR experiments, allowing for the assignment of all 1H and 13C resonances. The most relevant signals in the 1H NMR spectrum of RotH23+ (Figure a) are (i) the sharp singlet at 8.6 ppm, related to the Tz aromatic C–H, and (ii) the peaks in the region between 4.5 and 4.8 ppm, assigned to the benzylic protons exhibiting the characteristic multiplicity of Am stations complexed by crown ether rings.[38]
Figure 2

1H NMR spectra (500 MHz, CD2Cl2, 298 K) of (a) trication RotH23+ (red trace) and the species observed upon deprotonation with the heterogeneous phosphazene base B1: (b) mixture of dications RotH2+-I and RotH2+-II (blue trace), and (c) monocation Rot+ (green trace). The peak marked with an asterisk is due to the residual solvent.

1H NMR spectra (500 MHz, CD2Cl2, 298 K) of (a) trication RotH23+ (red trace) and the species observed upon deprotonation with the heterogeneous phosphazene base B1: (b) mixture of dications RotH2+-I and RotH2+-II (blue trace), and (c) monocation Rot+ (green trace). The peak marked with an asterisk is due to the residual solvent.

Base-Induced Switching

The tricationic rotaxane RotH23+ presents two ammonium stations that can be deactivated by the addition of a suitable base. The behavior of RotH23+ toward deprotonation was investigated by 1H NMR spectroscopy throughout the sequential addition of the heterogeneous phosphazene base B1 (polystyrene-supported BEMP, see the Supporting Information). As the reaction proceeds, two new products are formed as unambiguously indicated by the two independent sets of signals, each containing a triazolium-related peak (HTz, Figure and Figure S37). The considerable downfield shift displayed by these peaks, moving from 8.60 ppm in RotH23+ to 9.35 and 9.21 ppm, is attributed to the complexation of the Tz cation by a crown ether ring upon deactivation of one of the Am stations.[39] The two new patterns persist until the full conversion of the starting rotaxane RotH23+ (addition of one equivalent of B1, Figure b) and are as such assigned to the two isomers RotH2+-I and RotH2+-II, formed upon monodeprotonation of the parent compound RotH23+. The stoichiometric deprotonation of the rotaxane performed with the heterogeneous base B1 was validated with a control experiment carried out in homogeneous solution by adding 1 equiv. of the phosphazene base P1-tert-butyl (B2, see the Supporting Information) under the same reaction conditions (Figure S38). The existence of the two species RotH2+-I and RotH2+-II derives from the quasi-symmetry of the axle, which imparts a nonequivalent nature to the two ammonium stations located on each side of the central triazolium cation in RotH23+. The identity of the dicationic rotaxanes was assigned in accordance with their DFT-computed relative stabilities (vide infra). It is important to note that the RotH2+-I/RotH2+-II ratio is 30:70; it does not change over time, and it remains the same throughout the whole stepwise deprotonation up to the addition of 1 equiv. of base. Such observations suggest that the two species are in thermodynamic equilibrium and possess different stabilities. On the other hand, forms I and II of RotH2+ exhibit distinct signals in the 1H NMR spectra, indicating that the exchange between the two species is slow on the NMR time scale. Indeed, EXSY experiments performed on monodeprotonated RotH23+ (Figure S40) confirm the presence of an active exchange pathway between RotH2+-I and RotH2+-II, which takes place with a rate constant of 2.2 s–1. Starting from the mixture of RotH2+-I and RotH2+-II, further deprotonation with a second equivalent of B1 produces the monocation Rot+ as the only product, confirming the correct assignment of the two dicationic intermediates through their convergent reactivity (Figure c). The complete deprotonation of RotH23+ into Rot+ causes significant shifts in the related 1H NMR spectra (Figure ). In particular, a deshielding is observed for all the signals related to the nuclei placed around the Tz core, whereas the Tz aryl peak remains almost unaltered and the Tz methyl group becomes shielded by 0.88 ppm.[31,40,41] These changes suggest that in Rot+ both rings have moved toward the central triazolium station, with neither of them overtaking it.
Figure 3

1H NMR chemical shift variations upon deprotonation of RotH23+ into Rot+ (500 MHz, CD2Cl2, 298 K). The Δδ values in red and blue correspond to shielding and deshielding effects, respectively. For clarity, the two DB24C8 rings and the anion have been omitted.

1H NMR chemical shift variations upon deprotonation of RotH23+ into Rot+ (500 MHz, CD2Cl2, 298 K). The Δδ values in red and blue correspond to shielding and deshielding effects, respectively. For clarity, the two DB24C8 rings and the anion have been omitted. The nucleophilic amine sites generated upon deprotonation are in principle available for functionalization. Thus, compound Rot+ was reacted with di-tert-butyl dicarbonate, accessing the bis-carbamate RotBoc2+ (Figure S41). The 1H NMR spectrum of RotBoc2+ shows a set of peaks that is almost unchanged compared to the one observed in Rot+, except for the peaks directly influenced by the newly formed carbamate group. The close similarity of the NMR spectra of the deprotonated and Boc-protected rotaxanes confirms that in Rot+ the rings have moved away from the amine sites. The effortless attainment of RotBoc2+ is also an indirect evidence for the translation of the crown ether rings toward the center of the rotaxane in Rot+, as it is well-known that reactivity of functional groups encircled by a macrocycle in a rotaxane can be hindered.[21,32,42,43]

Thermodynamic Analysis of Deprotonation

Hydrogen bonding interactions established between a crown ether ring and an ammonium station have a considerable impact on the thermodynamic properties of the latter. Upon complexation, the acidity of the ammonium cation dramatically decreases,[32−34] reaching pKa values commonly associated with much weaker acids like guanidinium and phosphazenium cations.[44] The different ring dispositions observed in RotH23+, RotH2+, and Rot+ are thus expected to confer distinct thermodynamic features to the four kinds of ammonium stations—on the side of the ethylene or methylene bridge, free or complexed—comprised in these rotaxanes. We exploited NMR and UV–vis spectroscopies to investigate this peculiar situation in acetonitrile. The interconversion between the different protonated forms of the rotaxanes occurs through a network of acid–base equilibria, characterized by the acidity constants K1–K4, and the exchange between the dications RotH2+-I and RotH2+-II, regulated by the equilibrium constant Kex (Figure ). The value of Kex was inferred from the NMR spectra, and the values of K1–K4 were calculated by solving the equations that describe the reaction network at equilibrium (Figure S47), using the spectrophotometric titration data with the phosphazene B2 (Figures S45–S46) whose acidity constant in acetonitrile is known.[45]
Figure 4

Schematic representation of the equilibria involved in the interconversion between RotH23+, RotH2+ (I and II), and Rot+.

Schematic representation of the equilibria involved in the interconversion between RotH23+, RotH2+ (I and II), and Rot+. The trication RotH23+ undergoes deprotonation to yield the two isomers RotH2+-I and RotH2+-II with pK1 = 23.5 and pK2 = 23.2, respectively; successive deprotonation of these two forms affords the monocation Rot+ with pK3 = 24.2 and pK4 = 24.5, respectively. It must be first emphasized that the supramolecular coordination of the rings in the rotaxane is necessary to express the difference between the acidity constants of the two ammonium sites. These units are not chemically identical in the axle because of the uneven lengths of the alkyl bridges on either side of the triazolium cation and the orientation of the latter; in the free axle, however, the two monodeprotonated species are in fast exchange and cannot be individually detected (Figure S42). The ringless compound 9 therefore has to be treated as a simple diprotic acid whose dissociation constants were determined as pK1′ = 16.9 and pK2′ = 17.5 (Figure S46). Conversely, as noted in the previous paragraph, the two monodeprotonated forms of the rotaxane are in slow equilibrium on the 1H NMR time scale. Most likely, the proton exchange in the rotaxane is slow because (i) the removal of a proton from the complexed ammonium station is kinetically hindered, and/or (ii) the proton exchange between forms I and II involves the displacement of two rings (Figure ). In the rotaxane, the two ammonium units not only become much harder to deprotonate because of the rings encircling them but also exhibit clearly different pKa values; namely, the ammonium on the ethylene bridge side is about two times easier to deprotonate than that on the other side. Another significant result is that the presence of a ring on the triazolium cation affects the acidity of the nearby complexed ammonium station, as, for instance, observed by comparing K1 and K4. Although the local chemical environment of the ammonium site on the methylene bridge side of RotH23+ and RotH2+-II is the same, it can be argued that in RotH2+-II the steric interaction between the ring on the triazolium and that on the ammonium disfavors the shuttling of the latter, thus making the station less acidic (K4 < K1). A similar consideration can be done for the ammonium station on the ethylene bridge side by comparing the values of K2 and K3. The fact that the magnitude of this effect (ΔpKa = 1.0 units for both ammonium sites) exceeds the pKa difference of the two successive deprotonations of the free axle (ΔpKa = 0.6 units) highlights the peculiar role of the mobile macrocycles in the acid–base equilibrium network.

Variable-Temperature NMR

The cation Rot+ is a unique rotaxane in which two crown ethers share a single triazolium station. We envisaged that the weak ion-dipole interaction holding the macrocycles close to the station would create a highly dynamic system; we therefore investigated the behavior of the crown ether rings in Rot+ by means of variable-temperature NMR analysis in acetonitrile (Figure and S43). As a result of its anticipated dynamic nature, large spectral variations are observed in 1H NMR VT experiments performed on Rot+. In particular, the observed shielding upon temperature increase of the resonances on the methylene bridge side (H5), together with the deshielding of the resonances on the ethylene bridge side (H1, H2) are indicative of a concomitant shuttling of the rings toward the ethylene bridge. Additionally, the minor changes in chemical shift observed for the ethylene bridge protons H3 and the methylene bridge protons H4 imply that these atoms are subjected to a similar local environment at different temperatures. More insight is provided by the variation of the triazolium C–H peak (HTz, Figure b): in contrast to the unidirectional trends mentioned above, the triazolium peak undergoes an initial shielding, shifting from 9.04 ppm at 233 K to 8.73 ppm at 313 K. An additional increase in temperature, however, does not lead to further shielding; instead, a low-field shift up to 8.76 ppm is observed at 343 K. Such unusual behavior is indicative of a multimodal dynamic system involving multiple coconformations, whose population distribution is temperature dependent. Similarly to the properties emerged from the deprotonation study, this peculiar temperature-dependent behavior arises from the displacement of the rings along the axle, as confirmed by the fact that variable-temperature experiments on the free monocationic axle display only unidirectional chemical shift variations (Figure S44). More information on this point was gained from molecular modeling studies.
Figure 5

(a) Portion of the variable-temperature 1H NMR spectra of Rot+ (500 MHz, CD3CN). (b) Magnification of the chemical shift variation of the triazolium peak HTz. For peak assignment refer to Figure .

(a) Portion of the variable-temperature 1H NMR spectra of Rot+ (500 MHz, CD3CN). (b) Magnification of the chemical shift variation of the triazolium peak HTz. For peak assignment refer to Figure .

Molecular Modeling

Atomistic-level insight on the structure, the thermodynamics and the kinetics of the different [3]rotaxanes RotH23+, RotH2+-I, RotH2+-II, and Rot+ was provided by density functional theory (DFT) modeling.[46,47] Whereas the instances where nS ≥ nR were tackled via geometry optimizations, the case where nR > nS (i.e., Rot+) was investigated via a finite temperature DFT-metadynamics approach (see the Supporting Information for an account of the computational approaches).[48−52] Indeed, in the Rot+ case, a competition can be foretold for the two DB24C8 macrocycles to approach the only charged station in the axle, which could lead to a highly dynamic “frustrated” system. We first analyzed the nS ≥ nR cases. In RotH23+ the rings are located on the two ammonium stations (Figure S49), in agreement with the experimental results. The two dicationic [3]rotaxanes, RotH2+-I and RotH2+-II, feature one macrocycle on the protonated Am station, whereas the other ring encircles the Tz station in the center of the axle (Figures S50 and S51). RotH2+-II is more stable by 1.4 kcal mol–1 with respect to RotH2+-I (≈2kT at room temperature). The calculated NMR chemical shifts for both dications are compared with those for the RotH23+ trication in Figure S52. The calculations reproduce fairly well the chemical shift trend of the triazolium proton HTz in the first deprotonation step (RotH23+RotH2+-I and RotH2+-II), confirming that the stable occupation of the Tz station by one DB24C8 macrocycle causes a significant change in the HTz chemical shift. We expect a more complex behavior for Rot+ because two macrocycles are competing for the sole station (Tz) remained on the axle. The free energy profile for the shuttling of the two macrocycles with respect to the central triazolium site is shown in Figure . Because of the large dimensions of the system, this profile was calculated in vacuum, hence the predicted barriers are higher than the real ones. However, previous studies on rotaxanes indicated that although the inclusion of solvent molecules decreases the barriers by about 15 kcal mol–1, the transition state structures do not change appreciably with respect to vacuum calculations.[53] Therefore, although we acknowledge that all barriers are quantitatively overestimated, we are confident that the free energy path provides a qualitatively correct picture of the shuttling process. The profile displays three free energy wells with comparable depth characterized by a very different mutual arrangement of the molecular components.
Figure 6

Free energy profile (kcal mol–1) for the shuttling of the two macrocycles along the axle in Rot+. The collective variable CV (in Å) represents the displacement of the ethereal oxygen atoms of the two rings with respect to the Tz nitrogen atoms (see the Supporting Information for details). The three different coconformations of Rot+ characterized by deep free energy minima are labeled A, B, and C.

Free energy profile (kcal mol–1) for the shuttling of the two macrocycles along the axle in Rot+. The collective variable CV (in Å) represents the displacement of the ethereal oxygen atoms of the two rings with respect to the Tz nitrogen atoms (see the Supporting Information for details). The three different coconformations of Rot+ characterized by deep free energy minima are labeled A, B, and C. Typical structures representative of the three minima are shown in Figure . In structure A, one macrocycle is located close to the Tz station and the other one is on the ethylene bridge side. In structure B, both macrocycles are close to the central Tz station. In structure C, one DB24C8 ring is close to the central Tz station and the other ring sits on the methylene bridge side. The profile in Figure highlights a significantly lower barrier for the B → C path with respect to the B → A one. Such a multiwell free energy profile can explain the unusual temperature-dependent behavior of Rot+ as detected by VT-NMR analysis.
Figure 7

Graphical representations of the three coconformations extracted from the combined Metadynamics-DFT simulation of Rot+ at room temperature. The reported coconformations are representative of the three free energy minima labeled A, B, and C in Figure . Color code: C, cyan; N, blue; O, red; H, white. The corresponding structural formulas are also shown for clarity.

Graphical representations of the three coconformations extracted from the combined Metadynamics-DFT simulation of Rot+ at room temperature. The reported coconformations are representative of the three free energy minima labeled A, B, and C in Figure . Color code: C, cyan; N, blue; O, red; H, white. The corresponding structural formulas are also shown for clarity. At low temperatures, the most stable structure C is predominant, whereas at intermediate temperatures, both C and B are present in comparable concentrations. The population increase of structure A requires higher temperatures because A is less stable than B and C. This hypothesis is supported by the calculated chemical shift of the triazolium proton HTz, which indicates a deshielding for structure C, a moderate shielding for structure B, and again, a deshielding for structure A (Figure S53), in agreement with the experimental VT-NMR data (Figure b). In fact, Figure indicates that a macrocycle encircling the central Tz station like in RotH2+-I and RotH2+-II causes a pronounced deshielding of the triazolium proton HTz. On the contrary, the chemical shift decreases when the Tz proton is far away from the ethereal oxygen atoms of a DB24C8 macrocycle, like in RotH23+ (Figure S49). In both A and C, a macrocycle is very close to the Tz station, hence the HTz proton is deshielded. Conversely, in structure B, both macrocycles are relatively distant from the Tz central station, and the signal calculated for the HTz proton is not deshielded. The much higher barrier for the B → A path than for the B → C one suggests that directionally controlled shuttling motion could in principle be achieved in triazolium-based rotaxanes. Because of the intrinsic asymmetry of the Tz group, which can be approximated to a flat rigid section bearing an off-axis methyl, the macrocycle transit can occur by two nonequivalent paths (Figure ).
Figure 8

Ball-and-stick representation of a triazolium unit encircled by a macrocycle (red oval). Color code: C, cyan; N, blue; H, white. The red arrows represent two nonequivalent shuttling directions for the macrocycle.

Ball-and-stick representation of a triazolium unit encircled by a macrocycle (red oval). Color code: C, cyan; N, blue; H, white. The red arrows represent two nonequivalent shuttling directions for the macrocycle. The difference in free energy for the B → A transit with respect to the B → C one can be related to such an asymmetry. In particular, in the B → C case, a macrocycle should first pass over the flat rigid part of the Tz, thus hindering the Tz rotation (left-hand side in Figures and 9). As a consequence, the passage is easier and the B → C transit can be completed at a lower free energy cost (Figure , lower panels). On the other hand, in the B → A case, the macrocycle should first impact with the bulkier methyl group, causing a rotation of the Tz along the Cα-Cβ single bond (right-hand side in Figures and 9). As a result, the transit of the macrocycle is hampered by the Tz rotation and hence is accomplished at a greater free energy cost (Figure , upper panels).
Figure 9

Snapshots taken from the DFT-metadynamics simulation of Rot+. Top panels: right-to-left transit of a DB24C8 macrocycle over the Tz station, describing the B → A path. Bottom panels: left-to-right transit of a DB24C8 macrocycle over the Tz station, describing the B → C path. Color code: H, white; N, blue; O, red. C atoms belonging to the axle in gray, C atoms belonging to the DB24C8 rings in yellow, C atoms of the triazolium group in orange. Atoms of the axle are represented as spheres, atoms of the macrocycles are represented as sticks.

Snapshots taken from the DFT-metadynamics simulation of Rot+. Top panels: right-to-left transit of a DB24C8 macrocycle over the Tz station, describing the B → A path. Bottom panels: left-to-right transit of a DB24C8 macrocycle over the Tz station, describing the B → C path. Color code: H, white; N, blue; O, red. C atoms belonging to the axle in gray, C atoms belonging to the DB24C8 rings in yellow, C atoms of the triazolium group in orange. Atoms of the axle are represented as spheres, atoms of the macrocycles are represented as sticks. Movies S1–S3 show that such a mechanism, previously detected for the transit of a DB24C8 macrocycle over a different pseudostopper,[53] is operative also in the B → A path described here. The rotation of Tz during the transit is accompanied by low-energy synchronous vibrations of the crown ether ring, which provide the appropriate deformation needed to accomplish the shuttling.[53] In particular, Movie S1 highlights that a rotation of nearly 90° of the Tz moiety occurs along the B → A path, whereas no similar rotation of the Tz group has been detected during the B → C transit (Movie S3). Finally, Movie S2 illustrates the proximity of the rings to share the complexation of the triazolium station.

Conclusion

We have designed and investigated a [3]rotaxane that contains two acid–base-switchable ammonium sites and an acid–base-insensitive triazolium unit, giving access to a family of rotaxanes whose members – RotH23+, RotH2+, and Rot+ – contain a number of recognition sites (nS) respectively larger than, equal to, or lower than the number of interlocked macrocyclic rings (nR). Detailed spectroscopic studies and DFT-metadynamics calculations showed that these molecules exhibit markedly different structural and dynamic properties. In RotH23+, the two crown ethers encircle the ammonium stations, making them harder to deprotonate by a base in solution; moreover, they exhibit different pKa values because of the inherent asymmetry of the axle. RotH2+ can exist in two nonequivalent isomeric forms that differ for the position of the ammonium site (and of its surrounding macrocycle) with respect to the central triazolium. Although in the free axle these two isomers are in fast equilibrium and could not be individually observed, in the rotaxane the proton exchange between the isomers becomes slow due to the presence of the rings. Hence, the two forms of RotH2+ could be studied, and the peculiar effect of the moving rings on the acidity of the ammonium sites has been thoroughly characterized. The fully deprotonated species Rot+ has nS < nR, that is, there is only one recognition site for two rings. Such an arrangement is very rare, despite the large number of studies on rotaxanes available in the literature. Our expectation that a situation of this kind could lead to a frustrated, highly dynamic system was confirmed by variable-temperature NMR studies. We employed computational modeling to identify the stable coconformations available to the rotaxane and to simulate their NMR spectra; this approach enabled us to interpret the nontrivial spectroscopic results and understand the dynamic properties of Rot+. Not unexpectedly, stable coconformations of this rotaxane consist of one macrocycle catching the triazolium station with the other ring located in the vicinity. However, a deep energy minimum in which the two crown ethers are very close together and share the recognition site was also identified. Another significant observation is that the barrier for the transit of a macrocycle over the triazolium unit is different depending on the approaching direction along the axle, because of the presence of the asymmetrically positioned methyl substituent. This study shows that interesting and unusual thermodynamic and kinetic phenomena can emerge by interlocking multiple macrocyclic rings with a molecular axle and inducing a mismatch between rings and stations. The fact that the investigated compounds are based on simple molecular components (DB24C8 is commercially available) and a well-established chemistry makes them even more valuable[54] and is a useful premise for extending the study to higher-order rotaxanes. Research in this direction is important to foster the use of MIMs with designed physicochemical and mechanical properties as components of functional nanostructured devices and materials.
  42 in total

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Authors:  Yasutomo Segawa; Motonobu Kuwayama; Yuh Hijikata; Masako Fushimi; Taishi Nishihara; Jenny Pirillo; Junya Shirasaki; Natsumi Kubota; Kenichiro Itami
Journal:  Science       Date:  2019-07-19       Impact factor: 47.728

4.  A double-leg donor-acceptor molecular elevator: new insight into controlling the distance of two platforms.

Authors:  Zhi-Jun Zhang; Min Han; Heng-Yi Zhang; Yu Liu
Journal:  Org Lett       Date:  2013-03-27       Impact factor: 6.005

5.  A switchable [2]rotaxane asymmetric organocatalyst that utilizes an acyclic chiral secondary amine.

Authors:  Victor Blanco; David A Leigh; Vanesa Marcos; José A Morales-Serna; Alina L Nussbaumer
Journal:  J Am Chem Soc       Date:  2014-03-24       Impact factor: 15.419

6.  Distinguishing Two Ammonium and Triazolium Sites of Interaction in a Three-Station [2]Rotaxane Molecular Shuttle.

Authors:  Philip Waelès; Karine Fournel-Marotte; Frédéric Coutrot
Journal:  Chemistry       Date:  2017-07-24       Impact factor: 5.236

7.  A pH-Dependent, Mechanically Interlocked Switch: Organometallic [2]Rotaxane vs. Organic [3]Rotaxane.

Authors:  Philipp J Altmann; Alexander Pöthig
Journal:  Angew Chem Int Ed Engl       Date:  2017-11-14       Impact factor: 15.336

8.  Thermodynamic Insights on a Bistable Acid-Base Switchable Molecular Shuttle with Strongly Shifted Co-conformational Equilibria.

Authors:  Giulio Ragazzon; Alberto Credi; Benoit Colasson
Journal:  Chemistry       Date:  2017-01-04       Impact factor: 5.236

9.  Chemical On/Off Switching of Mechanically Planar Chirality and Chiral Anion Recognition in a [2]Rotaxane Molecular Shuttle.

Authors:  Stefano Corra; Christiaan de Vet; Jessica Groppi; Marcello La Rosa; Serena Silvi; Massimo Baroncini; Alberto Credi
Journal:  J Am Chem Soc       Date:  2019-05-30       Impact factor: 15.419

Review 10.  Electrochemically switchable rotaxanes: recent strides in new directions.

Authors:  Hendrik V Schröder; Christoph A Schalley
Journal:  Chem Sci       Date:  2019-10-03       Impact factor: 9.825

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  3 in total

1.  Photoinduced Autonomous Nonequilibrium Operation of a Molecular Shuttle by Combined Isomerization and Proton Transfer Through a Catalytic Pathway.

Authors:  Federico Nicoli; Massimiliano Curcio; Marina Tranfić Bakić; Erica Paltrinieri; Serena Silvi; Massimo Baroncini; Alberto Credi
Journal:  J Am Chem Soc       Date:  2022-05-16       Impact factor: 16.383

2.  GOx-assisted synthesis of pillar[5]arene based supramolecular polymeric nanoparticles for targeted/synergistic chemo-chemodynamic cancer therapy.

Authors:  Jin Wang; Di Wang; Moupan Cen; Danni Jing; Jiali Bei; Youyou Huang; Jiannan Zhang; Bing Lu; Yang Wang; Yong Yao
Journal:  J Nanobiotechnology       Date:  2022-01-11       Impact factor: 10.435

3.  Self-Assembly of Stimuli-Responsive [2]Rotaxanes by Amidinium Exchange.

Authors:  Oleg Borodin; Yevhenii Shchukin; Craig C Robertson; Stefan Richter; Max von Delius
Journal:  J Am Chem Soc       Date:  2021-09-24       Impact factor: 15.419

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