Literature DB >> 33913623

Combining data assimilation and machine learning to build data-driven models for unknown long time dynamics-Applications in cardiovascular modeling.

Francesco Regazzoni1,2,3, Dominique Chapelle2,3, Philippe Moireau2,3.   

Abstract

We propose a method to discover differential equations describing the long-term dynamics of phenomena featuring a multiscale behavior in time, starting from measurements taken at the fast-scale. Our methodology is based on a synergetic combination of data assimilation (DA), used to estimate the parameters associated with the known fast-scale dynamics, and machine learning (ML), used to infer the laws underlying the slow-scale dynamics. Specifically, by exploiting the scale separation between the fast and the slow dynamics, we propose a decoupling of time scales that allows to drastically lower the computational burden. Then, we propose a ML algorithm that learns a parametric mathematical model from a collection of time series coming from the phenomenon to be modeled. Moreover, we study the interpretability of the data-driven models obtained within the black-box learning framework proposed in this paper. In particular, we show that every model can be rewritten in infinitely many different equivalent ways, thus making intrinsically ill-posed the problem of learning a parametric differential equation starting from time series. Hence, we propose a strategy that allows to select a unique representative model in each equivalence class, thus enhancing the interpretability of the results. We demonstrate the effectiveness and noise-robustness of the proposed methods through several test cases, in which we reconstruct several differential models starting from time series generated through the models themselves. Finally, we show the results obtained for a test case in the cardiovascular modeling context, which sheds light on a promising field of application of the proposed methods.
© 2021 The Authors. International Journal for Numerical Methods in Biomedical Engineering published by John Wiley & Sons Ltd.

Entities:  

Keywords:  artificial neural networks; cardiovascular modeling; data assimilation; data-driven modeling; machine learning; multiscale problems

Year:  2021        PMID: 33913623     DOI: 10.1002/cnm.3471

Source DB:  PubMed          Journal:  Int J Numer Method Biomed Eng        ISSN: 2040-7939            Impact factor:   2.747


  2 in total

1.  Identification of useful genes from multiple microarrays for ulcerative colitis diagnosis based on machine learning methods.

Authors:  Lin Zhang; Rui Mao; Chung Tai Lau; Wai Chak Chung; Jacky C P Chan; Feng Liang; Chenchen Zhao; Xuan Zhang; Zhaoxiang Bian
Journal:  Sci Rep       Date:  2022-06-15       Impact factor: 4.996

Review 2.  Inverse problems in blood flow modeling: A review.

Authors:  David Nolte; Cristóbal Bertoglio
Journal:  Int J Numer Method Biomed Eng       Date:  2022-05-24       Impact factor: 2.648

  2 in total

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