Literature DB >> 33913093

DNA barcoding of some medicinally important plant species of Lamiaceae family in India.

Vishwa V Thakur1,2, Niraj Tripathi1, Sharad Tiwari3.   

Abstract

Several species of the Lamiaceae family are the primary source of bioactive aromatic oils and secondary metabolites, having broader applications in the cosmetics, pharmaceuticals, food, confectionery and liquor industries. Due to the scarcity of raw materials and high costs of this family's economically vital species, its products often adulterated to cater to the market's high demand. The present study provides a DNA based approach for identifying different species of this family. Henceforth, the performance of three already proposed barcode loci (matK, trnH-psbA and trnL) was examined for their PCR amplification and species recognition efficacy on various Lamiaceae species and cultivars using three different approaches such as pairwise genetic distance method, BLASTn and phylogenetic tree based on maximum likelihood (ML) analysis. Results illustrate that among all the DNA barcoding loci, matK locus can accurately and efficiently distinguish all the studied species followed by trnH-psbA and trnL. Present investigation may help diminish the illegal trade and events of adulteration of medicinally important plants species in genus Mentha, Ocimum and Plectranthus. This investigation will also help fulfil the scarcity of sequences of barcode loci of these species in the NCBI database. Apart from providing a molecular level reference for identifying processed herbal products, this technique also offers a convenient method for species identification and germplasm conservation of the Lamiaceae family.

Entities:  

Keywords:  DNA Barcoding; MatK; Mentha; Ocimum; Plectranthus; TrnH-psbA; TrnL

Mesh:

Substances:

Year:  2021        PMID: 33913093     DOI: 10.1007/s11033-021-06356-3

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  25 in total

1.  Noncoding plastid trnT-trnF sequences reveal a well resolved phylogeny of basal angiosperms.

Authors:  T Borsch; K W Hilu; D Quandt; V Wilde; C Neinhuis; W Barthlott
Journal:  J Evol Biol       Date:  2003-07       Impact factor: 2.411

2.  DNA barcoding in native plants of the Labiatae (Lamiaceae) family from Chios Island (Greece) and the adjacent Çeşme-Karaburun Peninsula (Turkey).

Authors:  Spyros Theodoridis; Anastasia Stefanaki; Meltem Tezcan; Cuneyt Aki; Stella Kokkini; Konstantinos E Vlachonasios
Journal:  Mol Ecol Resour       Date:  2012-03-07       Impact factor: 7.090

3.  Species identification using sequences of the trnL intron and the trnL-trnF IGS of chloroplast genome among popular plants in Taiwan.

Authors:  Li-Chin Tsai; Yung-Chien Yu; Hsing-Mei Hsieh; Jenn-Che Wang; Adrian Linacre; James Chun-I Lee
Journal:  Forensic Sci Int       Date:  2006-02-20       Impact factor: 2.395

4.  DNA barcodes: genes, genomics, and bioinformatics.

Authors:  W John Kress; David L Erickson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

5.  Nucleotide based validation of Ocimum species by evaluating three candidate barcodes of the chloroplast region.

Authors:  V L P Christina; A Annamalai
Journal:  Mol Ecol Resour       Date:  2013-10-25       Impact factor: 7.090

Review 6.  DNA barcoding of medicinal plant material for identification.

Authors:  Natascha Techen; Iffat Parveen; Zhiqiang Pan; Ikhlas A Khan
Journal:  Curr Opin Biotechnol       Date:  2013-11-16       Impact factor: 9.740

Review 7.  Therapeutic uses of Ocimum sanctum Linn (Tulsi) with a note on eugenol and its pharmacological actions: a short review.

Authors:  P Prakash; Neelu Gupta
Journal:  Indian J Physiol Pharmacol       Date:  2005-04

8.  The internal transcribed spacer (ITS) region and trnH-psbA [corrected] are suitable candidate loci for DNA barcoding of tropical tree species of India.

Authors:  Abhinandan Mani Tripathi; Antariksh Tyagi; Anoop Kumar; Akanksha Singh; Shivani Singh; Lal Babu Chaudhary; Sribash Roy
Journal:  PLoS One       Date:  2013-02-27       Impact factor: 3.240

9.  Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants.

Authors:  Jeffrey P Mower; Pascal Touzet; Julie S Gummow; Lynda F Delph; Jeffrey D Palmer
Journal:  BMC Evol Biol       Date:  2007-08-09       Impact factor: 3.260

10.  Identification of roots from grass swards using PCR-RFLP and FFLP of the plastid trnL (UAA) intron.

Authors:  Karyn P Ridgway; Janette M Duck; J Peter W Young
Journal:  BMC Ecol       Date:  2003-10-16       Impact factor: 2.964

View more
  1 in total

1.  Development and Application of a Cultivar-Specific Sequence-Characterized Amplified Region (SCAR) Marker for the Detection of Chrysanthemum morifolium Ramat. 'Daboju'.

Authors:  Yuchen Cai; Yadi Gao; Zhenhao Zhang; Huijie Liu; Yifan Wang; Yuxin Ma; Yixin Li; Shangguo Feng; Huizhong Wang
Journal:  Plants (Basel)       Date:  2022-02-24
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.