Literature DB >> 33908965

Mechanochemical properties of DNA origami nanosprings revealed by force jumps in optical tweezers.

Deepak Karna1, Wei Pan, Shankar Pandey, Yuki Suzuki, Hanbin Mao.   

Abstract

By incorporating pH responsive i-motif elements, we have constructed DNA origami nanosprings that respond to pH changes in the environment. Using an innovative force jump approach in optical tweezers, we have directly measured the spring constants and dynamic recoiling responses of the DNA nanosprings under different forces. These DNA nanosprings exhibited 3 times slower recoiling rates compared to duplex DNA backbones. In addition, we observed two distinct force regions which show different spring constants. In the entropic region below 2 pN, a spring constant of ∼0.03 pN nm-1 was obtained, whereas in the enthalpic region above 2 pN, the nanospring was 17 times stronger (0.5 pN nm-1). The force jump gave a more accurate measurement on nanospring constants compared to regular force ramping approaches, which only yielded an average spring constant in a specific force range. Compared to the reported DNA origami nanosprings with a completely different design, our nanospring is up to 50 times stiffer. The drastic increase in the spring constant and the pH responsive feature allow more robust applications of these nanosprings in many mechanobiological processes.

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Year:  2021        PMID: 33908965      PMCID: PMC8170849          DOI: 10.1039/d0nr08605c

Source DB:  PubMed          Journal:  Nanoscale        ISSN: 2040-3364            Impact factor:   7.790


  22 in total

1.  Stretching DNA with optical tweezers.

Authors:  M D Wang; H Yin; R Landick; J Gelles; S M Block
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

2.  A logic-gated nanorobot for targeted transport of molecular payloads.

Authors:  Shawn M Douglas; Ido Bachelet; George M Church
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

Review 3.  Single molecule microscopy methods for the study of DNA origami structures.

Authors:  Victoria Birkedal; Mingdong Dong; Monika M Golas; Bjoern Sander; Ebbe Sloth Andersen; Kurt Vesterager Gothelf; Flemming Besenbacher; Jørgen Kjems
Journal:  Microsc Res Tech       Date:  2010-12-03       Impact factor: 2.769

4.  DNA origami with complex curvatures in three-dimensional space.

Authors:  Dongran Han; Suchetan Pal; Jeanette Nangreave; Zhengtao Deng; Yan Liu; Hao Yan
Journal:  Science       Date:  2011-04-15       Impact factor: 47.728

Review 5.  DNA Origami: Scaffolds for Creating Higher Order Structures.

Authors:  Fan Hong; Fei Zhang; Yan Liu; Hao Yan
Journal:  Chem Rev       Date:  2017-06-12       Impact factor: 60.622

Review 6.  Unraveling the Mechanobiology of Extracellular Matrix.

Authors:  Viola Vogel
Journal:  Annu Rev Physiol       Date:  2018-02-10       Impact factor: 19.318

7.  Coexistence of an ILPR i-motif and a partially folded structure with comparable mechanical stability revealed at the single-molecule level.

Authors:  Soma Dhakal; Joseph D Schonhoft; Deepak Koirala; Zhongbo Yu; Soumitra Basu; Hanbin Mao
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

8.  Acid pH in tumors and its potential for therapeutic exploitation.

Authors:  I F Tannock; D Rotin
Journal:  Cancer Res       Date:  1989-08-15       Impact factor: 12.701

9.  Decreased water activity in nanoconfinement contributes to the folding of G-quadruplex and i-motif structures.

Authors:  Sagun Jonchhe; Shankar Pandey; Tomoko Emura; Kumi Hidaka; Mohammad Akter Hossain; Prakash Shrestha; Hiroshi Sugiyama; Masayuki Endo; Hanbin Mao
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-04       Impact factor: 11.205

10.  A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.

Authors:  Deepak Koirala; Soma Dhakal; Beth Ashbridge; Yuta Sannohe; Raphaël Rodriguez; Hiroshi Sugiyama; Shankar Balasubramanian; Hanbin Mao
Journal:  Nat Chem       Date:  2011-08-28       Impact factor: 24.427

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  1 in total

Review 1.  DNA origami nano-mechanics.

Authors:  Jiahao Ji; Deepak Karna; Hanbin Mao
Journal:  Chem Soc Rev       Date:  2021-11-01       Impact factor: 54.564

  1 in total

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