Literature DB >> 33903911

The evolution and engineering of enzyme activity through tuning conformational landscapes.

Adam M Damry1, Colin J Jackson1,2,3.   

Abstract

Proteins are dynamic molecules whose structures consist of an ensemble of conformational states. Dynamics contribute to protein function and a link to protein evolution has begun to emerge. This increased appreciation for the evolutionary impact of conformational sampling has grown from our developing structural biology capabilities and the exploration of directed evolution approaches, which have allowed evolutionary trajectories to be mapped. Recent studies have provided empirical examples of how proteins can evolve via conformational landscape alterations. Moreover, minor conformational substates have been shown to be involved in the emergence of new enzyme functions as they can become enriched through evolution. The role of remote mutations in stabilizing new active site geometries has also granted insight into the molecular basis underpinning poorly understood epistatic effects that guide protein evolution. Finally, we discuss how the growth of our understanding of remote mutations is beginning to refine our approach to engineering enzymes.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Keywords:  enzyme conformational landscapes; enzyme engineering; enzyme evolution; protein dynamics

Year:  2021        PMID: 33903911     DOI: 10.1093/protein/gzab009

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  1 in total

1.  Complex Loop Dynamics Underpin Activity, Specificity, and Evolvability in the (βα)8 Barrel Enzymes of Histidine and Tryptophan Biosynthesis.

Authors:  Adrian Romero-Rivera; Marina Corbella; Antonietta Parracino; Wayne M Patrick; Shina Caroline Lynn Kamerlin
Journal:  JACS Au       Date:  2022-04-04
  1 in total

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