Literature DB >> 33900611

Bamboo Transposon Research: Current Status and Perspectives.

Muthusamy Ramakrishnan1, Kim Yrjälä1,2, Viswanathan Satheesh3, Ming-Bing Zhou4,5.   

Abstract

Bamboo, a fast-growing non-timber forest plant with many uses, is a valuable species for green development. However, bamboo flowering is very infrequent, extending, in general, for up to 120 years. Ecologically, bamboo species are generally better adapted to various environments than other grasses. Therefore, the species deserves a special status in what could be called Ecological Bioeconomy. An understanding of the genetic processes of bamboo can help us sustainably develop and manage bamboo forests. Transposable elements (TEs), jumping genes or transposons, are major genetic elements in plant genomes. The rapid development of the bamboo reference genome, at the chromosome level, reveals that TEs occupy over 63.24% of the genome. This is higher than found in rice, Brachypodium, and sorghum. The bamboo genome contains diverse families of TEs, which play a significant role in bamboo's biological processes including growth and development. TEs provide important clues for understanding the evolution of the bamboo genome. In this chapter, we briefly describe the current status of research on TEs in the bamboo genome, their regulation, and transposition mechanisms. Perspectives for future research are also provided.

Entities:  

Keywords:  Bamboo; Bambusoideae; LTR-retrotransposons; Mariner-like elements; Nuclear export signal; Phyllostachys edulis; Ppmar1; Ppmar2; Transposable elements; Transposase

Year:  2021        PMID: 33900611     DOI: 10.1007/978-1-0716-1134-0_24

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  35 in total

Review 1.  Limitations, progress and prospects of application of biotechnological tools in improvement of bamboo-a plant with extraordinary qualities.

Authors:  Sharbati R Singh; Rohtas Singh; Sanjay Kalia; Sunita Dalal; A K Dhawan; Rajwant K Kalia
Journal:  Physiol Mol Biol Plants       Date:  2013-01

Review 2.  Bamboo: a new source of carbohydrate for biorefinery.

Authors:  Ming-xiong He; Jing-li Wang; Han Qin; Zong-xia Shui; Qi-li Zhu; Bo Wu; Fu-rong Tan; Ke Pan; Qi-chun Hu; Li-chun Dai; Wen-guo Wang; Xiao-yu Tang; Guo quan Hu
Journal:  Carbohydr Polym       Date:  2014-05-23       Impact factor: 9.381

3.  PhePEBP family genes regulated by plant hormones and drought are associated with the activation of lateral buds and seedling growth in Phyllostachys edulis.

Authors:  Jianwen Zhao; Peijun Gao; Chunlong Li; Xinchun Lin; Xiaoqin Guo; Shenkui Liu
Journal:  Tree Physiol       Date:  2019-08-01       Impact factor: 4.196

4.  Genome-wide identification and expression analysis of brassinosteroid action-related genes during the shoot growth of moso bamboo.

Authors:  Sining Wang; Huayu Sun; Xiurong Xu; Kebin Yang; Hansheng Zhao; Ying Li; Xueping Li; Zimin Gao
Journal:  Mol Biol Rep       Date:  2019-02-05       Impact factor: 2.316

5.  Potential Medicinal Application and Toxicity Evaluation of Extracts from Bamboo Plants.

Authors:  Jun Panee
Journal:  J Med Plant Res       Date:  2015-06-17

6.  Bamboo: an overview on its genetic diversity and characterization.

Authors:  Lucina Yeasmin; Md Nasim Ali; Saikat Gantait; Somsubhra Chakraborty
Journal:  3 Biotech       Date:  2014-03-01       Impact factor: 2.406

7.  Developing genome-wide microsatellite markers of bamboo and their applications on molecular marker assisted taxonomy for accessions in the genus Phyllostachys.

Authors:  Hansheng Zhao; Li Yang; Zhenhua Peng; Huayu Sun; Xianghua Yue; Yongfeng Lou; Lili Dong; Lili Wang; Zhimin Gao
Journal:  Sci Rep       Date:  2015-01-26       Impact factor: 4.379

8.  Genome sequence of the small brown planthopper, Laodelphax striatellus.

Authors:  Junjie Zhu; Feng Jiang; Xianhui Wang; Pengcheng Yang; Yanyuan Bao; Wan Zhao; Wei Wang; Hong Lu; Qianshuo Wang; Na Cui; Jing Li; Xiaofang Chen; Lan Luo; Jinting Yu; Le Kang; Feng Cui
Journal:  Gigascience       Date:  2017-12-01       Impact factor: 6.524

9.  Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae.

Authors:  Lei Zhao; Ning Zhang; Peng-Fei Ma; Qi Liu; De-Zhu Li; Zhen-Hua Guo
Journal:  PLoS One       Date:  2013-05-29       Impact factor: 3.240

10.  Carbon stock of Moso bamboo (Phyllostachys pubescens) forests along a latitude gradient in the subtropical region of China.

Authors:  Mengjie Xu; Haibao Ji; Shunyao Zhuang
Journal:  PLoS One       Date:  2018-02-16       Impact factor: 3.240

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  1 in total

1.  Long terminal repeats (LTR) and transcription factors regulate PHRE1 and PHRE2 activity in Moso bamboo under heat stress.

Authors:  Pradeep K Papolu; Muthusamy Ramakrishnan; Qiang Wei; Kunnummal Kurungara Vinod; Long-Hai Zou; Kim Yrjala; Ruslan Kalendar; Mingbing Zhou
Journal:  BMC Plant Biol       Date:  2021-12-09       Impact factor: 4.215

  1 in total

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