Literature DB >> 33899477

Transcription-Factor-based Biosensor Engineering for Applications in Synthetic Biology.

Nana Ding1,2, Shenghu Zhou1,2, Yu Deng1,2.   

Abstract

Transcription-factor-based biosensors (TFBs) are often used for metabolite detection, adaptive evolution, and metabolic flux control. However, designing TFBs with superior performance for applications in synthetic biology remains challenging. Specifically, natural TFBs often do not meet real-time detection requirements owing to their slow response times and inappropriate dynamic ranges, detection ranges, sensitivity, and selectivity. Furthermore, designing and optimizing complex dynamic regulation networks is time-consuming and labor-intensive. This Review highlights TFB-based applications and recent engineering strategies ranging from traditional trial-and-error approaches to novel computer-model-based rational design approaches. The limitations of the applications and these engineering strategies are additionally reviewed.

Entities:  

Keywords:  adaptive evolution; dose−response; dynamic regulation; genetic circuits; high-throughput screening

Mesh:

Substances:

Year:  2021        PMID: 33899477     DOI: 10.1021/acssynbio.0c00252

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  9 in total

1.  Development and Characterization of Indole-Responsive Whole-Cell Biosensor Based on the Inducible Gene Expression System from Pseudomonas putida KT2440.

Authors:  Paulius Matulis; Ingrida Kutraite; Ernesta Augustiniene; Egle Valanciene; Ilona Jonuskiene; Naglis Malys
Journal:  Int J Mol Sci       Date:  2022-04-22       Impact factor: 6.208

Review 2.  Synthetic Biology Approaches to Hydrocarbon Biosensors: A Review.

Authors:  Claudia F Moratti; Colin Scott; Nicholas V Coleman
Journal:  Front Bioeng Biotechnol       Date:  2022-01-10

Review 3.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

4.  High-throughput screening of cell-free riboswitches by fluorescence-activated droplet sorting.

Authors:  Takeshi Tabuchi; Yohei Yokobayashi
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

5.  De Novo Design of the ArsR Regulated Pars Promoter Enables a Highly Sensitive Whole-Cell Biosensor for Arsenic Contamination.

Authors:  Sheng-Yan Chen; Yan Zhang; Renjie Li; Baojun Wang; Bang-Ce Ye
Journal:  Anal Chem       Date:  2022-05-10       Impact factor: 8.008

6.  ERMer: a serverless platform for navigating, analyzing, and visualizing Escherichia coli regulatory landscape through graph database.

Authors:  Zhitao Mao; Ruoyu Wang; Haoran Li; Yixin Huang; Qiang Zhang; Xiaoping Liao; Hongwu Ma
Journal:  Nucleic Acids Res       Date:  2022-04-30       Impact factor: 19.160

7.  Surveying the Genetic Design Space for Transcription Factor-Based Metabolite Biosensors: Synthetic Gamma-Aminobutyric Acid and Propionate Biosensors in E. coli Nissle 1917.

Authors:  Matthew Lebovich; Lauren B Andrews
Journal:  Front Bioeng Biotechnol       Date:  2022-08-25

8.  Highly multiplexed selection of RNA aptamers against a small molecule library.

Authors:  Brent Townshend; Matias Kaplan; Christina D Smolke
Journal:  PLoS One       Date:  2022-09-15       Impact factor: 3.752

9.  Identification of acetic acid sensitive strains through biosensor-based screening of a Saccharomyces cerevisiae CRISPRi library.

Authors:  Maurizio Mormino; Ibai Lenitz; Verena Siewers; Yvonne Nygård
Journal:  Microb Cell Fact       Date:  2022-10-15       Impact factor: 6.352

  9 in total

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