| Literature DB >> 33897349 |
Mei-Gang Ma1,2, Xiao-Rong Liu1, Yuan Wu2, Jie Wang1, Bing-Mei Li1, Yi-Wu Shi1, Tao Su1, Bin Li1, De-Tian Liu1, Yong-Hong Yi1, Wei-Ping Liao1.
Abstract
RYR2 encodes ryanodine receptor 2 protein (RYR-2) that is mainly located on endoplasmic reticulum membrane and regulates intracellular calcium concentration. The RYR-2 protein is ubiquitously distributed and highly expressed in the heart and brain. Previous studies have identified the RYR2 mutations in the etiology of arrhythmogenic right ventricular dysplasia 2 and catecholaminergic polymorphic ventricular tachycardia. However, the relationship between RYR2 gene and epilepsy is not determined. In this study, we screened for novel genetic variants in a group of 292 cases (families) with benign epilepsy of childhood with centrotemporal spikes (BECTS) by trio-based whole-exome sequencing. RYR2 mutations were identified in five cases with BECTS, including one heterozygous frameshift mutation (c.14361dup/p.Arg4790Pro fs∗6), two heterozygous missense mutations (c.2353G > A/p.Asp785Asn and c.8574G > A/p.Met2858Ile), and two pairs of compound heterozygous mutations (c.4652A > G/p.Asn1551Ser and c.11693T > C/p.Ile3898Thr, c.7469T > C/p.Val2490Ala and c.12770G > A/p.Arg4257Gln, respectively). Asp785Asn was a de novo missense mutation. All the missense mutations were suggested to be damaging by at least three web-based prediction tools. These mutations do not present or at low minor allele frequency in gnomAD database and present statistically higher frequency in the cohort of BECTS than in the control populations of gnomAD. Asp785Asn, Asn1551Ser, and Ile3898Thr were predicted to affect hydrogen bonds with surrounding amino acids. Three affected individuals had arrhythmia (sinus arrhythmia and occasional atrial premature). The two probands with compound heterozygous missense mutations presented mild cardiac structural abnormalities. Strong evidence from ClinGen Clinical Validity Framework suggested an association between RYR2 variants and epilepsy. This study suggests that RYR2 gene is potentially a candidate pathogenic gene of BECTS. More attention should be paid to epilepsy patients with RYR2 mutations, which were associated with arrhythmia and sudden unexpected death in previous reports.Entities:
Keywords: BECTS; RYR2; arrhythmia; epilepsy; mutations
Year: 2021 PMID: 33897349 PMCID: PMC8058200 DOI: 10.3389/fnins.2021.629610
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
FIGURE 1Genetic data on the patients with RYR2 mutations. (A) Pedigrees of the five cases with RYR2 mutations and their corresponding phenotypes. (B) DNA sequence chromatogram of the RYR2 mutations. Arrows indicate the positions of the mutations. (C) The amino acid sequence alignment of the residues of missense mutations shows Asp785, Asn1551, and Ile3898 are highly conserved in various species, whereas Val2490, Met2858, and Arg4257 are less conserved.
Genetic features of the individuals with RYR2 mutations.
| Case | Position | NCBI SNP number | cDNA change (NM_001035.2) | Protein change | Inherit. | MAF | MAF-EAS | SIFT | PP2_Var | Mutation taster | CADD | GERP++ | phyloP | phastCons | SiPhy |
| Case1 | chr1:237972262 | – | c.14361dup | p.Arg4790Pro fs*6 | Paternal | – | – | – | – | – | – | – | – | – | – |
| Case 2 | chr1:237664160 | rs774486571 | c.2353G > A | p.Asp785Asn | 4.06e-6 | 0 | D (0.036) | PD (0.957) | D (1.000) | D (23.9) | C (5.98) | C (9.994) | C (1.000) | C (20.458) | |
| Case 3 | chr1:237831242 | – | c.8574G > A | p.Met2858Ile | Maternal | – | – | T (0.185) | B (0.012) | D (0.998) | D (23.1) | C (4.44) | C (4.702) | C (1.000) | C (15.336) |
| Case 4 | chr1:237765380 | rs185237690 | c.4652A > G | p.Asn1551Ser | Paternal | 3.0e-4 | 4.0e-3 | T (0.295) | B (0.401) | D (0.983) | D (23.9) | C (5.53) | C (7.568) | C (1.000) | C (15.651) |
| chr1:237936866 | – | c.11693T > C | p.Ile3898Thr | Maternal | – | – | D (0.000) | PD (0.997) | D (1.000) | D (28.0) | C (5.13) | C (8.010) | C (1.000) | C (15.262) | |
| Case 5 | chr1:237811870 | – | c.7469T > C | p.Val2490Ala | Maternal | – | – | T (0.404) | PD (0.996) | D (1.000) | D (23.7) | C (5.16) | C (8.017) | C (1.000) | C (15.285) |
| chr1: 237947782 | rs371396204 | c.12770G > A | p.Arg4257Gln | Paternal | 0 | 0 | T (0.273) | B (0.079) | D (0.561) | T (12.69) | C (5.11) | C (4.146) | NC (0.999) | NC (6.101) |
Gene-based burden analysis for RYR2 mutations identified in this study.
| Allele count/number in this study (%) | Allele count/number in controls of gnomAD-all populations (%) | Allele count/number in controls of gnomAD-East Asian populations (%) | |
| c.14361dup/p.Arg4790Pro fs*6 | 1/584 (0.17) | −/− | −/− |
| c.2353G > A/p.Asp785Asn | 1/584 (0.17) | 1/108530 (0.00092) | 0/8638 (0) |
| c.8574G > A/p.Met2858Ile | 1/584 (0.17) | −/− | −/− |
| c.4652A > G/p.Asn1551Ser | 1/584 (0.17) | 39/119132 (0.0327) | 35/9528 (0.367) |
| c.11693T > C/p.Ile3898Thr | 1/584 (0.17) | −/− | −/− |
| c.7469T > C/p.Val2490Ala | 1/584 (0.17) | −/− | −/− |
| c.12770G > A/p.Arg4257Gln | 1/584 (0.17) | −/− | −/− |
| 7/584 (1.20) | 40/108530 (0.0369) | 35/8638 (0.4052) | |
| 6.34e-9 | 0.015 | ||
| 32.90 (14.68–73.76) | 2.98 (1.32–6.74) | ||
FIGURE 2Schematic illustration of mutations. All the missense mutations were located in the cytoplasmic part of RYR-2 protein. The de novo missense mutation Asp785Asn was located in SPRY1 domain; mutation Asn551 was located in SPRY3 domain.
FIGURE 3Crystal structure of RYR-2 (PDB: 6jiy) and hydrogen bond changes of the mutants. (A) Overview of RYR2 and positions of the mutations. (B) Asp785Asn, hydrogen bond with Gly786 disappeared; Asn1551Ser, hydrogen bond with Phe1290 disappeared; Ile3898Thr, formed new hydrogen bonds with Tyr3892 and Gln3964.
Clinical features of the individuals with RYR2 mutations.
| Case | Variants (NM_001035.2) | Gender | Age | Seizure onset | Seizure and frequency | Seizure timing | EEG | ECG | CUS | Effective AEDs | Seizure-free duration (years) |
| Case 1 | p.Arg4790Pro fs*6 | Male | 10 years | 8 years | sGTCS, 6 times/years | Nocturnal | Right frontal and bilateral central sharp waves and sharp-slow waves | Normal | NA | VPA | 1.5 |
| Case 2 | p.Asp785Asn | Male | 18 years | 12 years, 5 months | GTCS, 2 times/months | Nocturnal | Bilateral centrotemporal sharp-slow waves | Normal | normal | VPA, LEV | 5 |
| Case 3 | p.Met2858Ile | Female | 14 years | 6 years, 3 months | CPS and sGTCS, 2–4 times/months | Nocturnal | Ictal: sGTCS originated from left central region; interictal: bilateral centroemporal and parietal spike or sharp waves | Sinus arrhythmia | NA | VPA, LEV | 6 |
| Case 4 | p.Asn1551Ser, p.Ile3898Thr | Female | 13 years | 4 years | CPS and GTCS, once/month | Diurnal and nocturnal | Bilateral centrotemporal spikes, sharp waves, and sharp-slow waves | Normal | Light tricuspid and pulmonary valve regurgitation | VPA | 7 |
| Case 5 | p.Val2490Ala, p.Arg4257Gln | Female | 7 years | 5 years | sGTCS, 1–2 times/months | Nocturnal | Bilateral centrotemporal spikes | Sinus arrhythmia and occasional atrial premature | Light tricuspid regurgitation | LTG | 1 |
FIGURE 4EEG discharges in the patients with RYR2 mutations. (A) Interictal EEG of case 4 showed left or right centrotemporal spike and slow waves (obtained at the age of 11 years). (B) Interictal EEG of case 3, the red arrow indicates electrodes recording ECG of arrhythmia during NREMIII sleep (at the age of 7 years). (C) Ictal EEG of case 3, the red arrows indicate timing of seizure (at the age of 7 years). (D) The ECG of case 5 showed sinus arrhythmia and atrial premature beats.
Evaluating the clinical validity of RYR2-epilepsy associations based on the framework developed by the clinical genome resource.