Literature DB >> 33893381

Comprehensive coverage of human last meal components revealed by a forensic DNA metabarcoding approach.

Judith Schneider1, Eduard Mas-Carrió1, Catherine Jan2, Christian Miquel3, Pierre Taberlet3,4, Katarzyna Michaud2, Luca Fumagalli5,6.   

Abstract

Stomach content analyses are a valuable tool in human forensic science to interpret perimortem events. While the identification of food components of plant and animal origin has traditionally been conducted by macro- and microscopical approaches in case of incomplete digestion, molecular methods provide the potential to increase sensitivity and taxonomic resolution. In particular, DNA metabarcoding (PCR-amplification and next generation sequencing of complex DNA mixtures) has seen a rapid growth in the field of wildlife ecology to assess species' diets from faecal and gastric samples. Despite clear advantages, molecular approaches have not yet been established in routine human forensics to investigate the last meal components of deceased persons. In this pilot study we applied for the first time a DNA metabarcoding approach to assess both plant and vertebrate components of 48 human stomach content samples taken during medicolegal autopsies. We obtained a final dataset with 34 vertebrate and 124 vegetal unique sequences, that were clustered to 9 and 33 operational taxonomic units (OTUs), respectively. Our results suggest that this approach can provide crucial information about circumstances preceding death, and open promising perspectives for biomedical dietary surveys based on digested food items found in the gastrointestinal tract.

Entities:  

Year:  2021        PMID: 33893381     DOI: 10.1038/s41598-021-88418-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  24 in total

Review 1.  Who is eating what: diet assessment using next generation sequencing.

Authors:  Francois Pompanon; Bruce E Deagle; William O C Symondson; David S Brown; Simon N Jarman; Pierre Taberlet
Journal:  Mol Ecol       Date:  2011-12-15       Impact factor: 6.185

2.  Genetic analysis of individual seeds by amplified fragment length polymorphism.

Authors:  Cheng-Lung Lee; Heather Miller Coyle; Henry C Lee
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

3.  DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet.

Authors:  M De Barba; C Miquel; F Boyer; C Mercier; D Rioux; E Coissac; P Taberlet
Journal:  Mol Ecol Resour       Date:  2013-11-16       Impact factor: 7.090

4.  New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach.

Authors:  Alice Valentini; Christian Miquel; Muhammad Ali Nawaz; Eva Bellemain; Eric Coissac; François Pompanon; Ludovic Gielly; Corinne Cruaud; Giuseppe Nascetti; Patrick Wincker; Jon E Swenson; Pierre Taberlet
Journal:  Mol Ecol Resour       Date:  2008-10-22       Impact factor: 7.090

5.  Towards next-generation biodiversity assessment using DNA metabarcoding.

Authors:  Pierre Taberlet; Eric Coissac; François Pompanon; Christian Brochmann; Eske Willerslev
Journal:  Mol Ecol       Date:  2012-04       Impact factor: 6.185

6.  Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan.

Authors:  Wasim Shehzad; Tiayyba Riaz; Muhammad A Nawaz; Christian Miquel; Carole Poillot; Safdar A Shah; François Pompanon; Eric Coissac; Pierre Taberlet
Journal:  Mol Ecol       Date:  2012-01-17       Impact factor: 6.185

7.  Quantification of damage in DNA recovered from highly degraded samples--a case study on DNA in faeces.

Authors:  Bruce E Deagle; J Paige Eveson; Simon N Jarman
Journal:  Front Zool       Date:  2006-08-16       Impact factor: 3.172

8.  Metabarcoding analysis of the stomach contents of the Antarctic Toothfish (Dissostichus mawsoni) collected in the Antarctic Ocean.

Authors:  Tae-Ho Yoon; Hye-Eun Kang; Soo Rin Lee; Jae-Bong Lee; Gun Wook Baeck; Hyun Park; Hyun-Woo Kim
Journal:  PeerJ       Date:  2017-11-07       Impact factor: 2.984

9.  Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs.

Authors:  Hege Vestheim; Simon N Jarman
Journal:  Front Zool       Date:  2008-07-20       Impact factor: 3.172

10.  The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals.

Authors:  Frank Maixner; Dmitrij Turaev; Amaury Cazenave-Gassiot; Marek Janko; Ben Krause-Kyora; Michael R Hoopmann; Ulrike Kusebauch; Mark Sartain; Gea Guerriero; Niall O'Sullivan; Matthew Teasdale; Giovanna Cipollini; Alice Paladin; Valeria Mattiangeli; Marco Samadelli; Umberto Tecchiati; Andreas Putzer; Mine Palazoglu; John Meissen; Sandra Lösch; Philipp Rausch; John F Baines; Bum Jin Kim; Hyun-Joo An; Paul Gostner; Eduard Egarter-Vigl; Peter Malfertheiner; Andreas Keller; Robert W Stark; Markus Wenk; David Bishop; Daniel G Bradley; Oliver Fiehn; Lars Engstrand; Robert L Moritz; Philip Doble; Andre Franke; Almut Nebel; Klaus Oeggl; Thomas Rattei; Rudolf Grimm; Albert Zink
Journal:  Curr Biol       Date:  2018-07-12       Impact factor: 10.834

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