Literature DB >> 33893071

Plasma miRNA Biomarkers in Limited Volume Samples for Detection of Early-stage Pancreatic Cancer.

Rachel L Dittmar1,2, Suyu Liu2,3, Mei Chee Tai1, Kimal Rajapakshe4, Ying Huang5,6, Gary Longton5, Christine DeCapite7, Mark W Hurd1, Pamela L Paris8, Kimberly S Kirkwood9, Cristian Coarfa4,10, Anirban Maitra1,2, Randall E Brand7, Ann M Killary1,2, Subrata Sen11,2.   

Abstract

Early detection of pancreatic ductal adenocarcinoma (PDAC) is key to improving patient outcomes; however, PDAC is usually diagnosed late. Therefore, blood-based minimally invasive biomarker assays for limited volume clinical samples are urgently needed. A novel miRNA profiling platform (Abcam Fireplex-Oncology Panel) was used to investigate the feasibility of developing early detection miRNA biomarkers with 20 μL plasma from a training set (58 stage II PDAC cases and 30 controls) and two validation sets (34 stage II PDAC cases and 25 controls; 44 stage II PDAC cases and 18 controls). miR-34a-5p [AUC = 0.77; 95% confidence interval (CI), 0.66-0.87], miR-130a-3p (AUC = 0.74; 95% CI, 0.63-0.84), and miR-222-3p (AUC = 0.70; 95% CI, 0.58-0.81) were identified as significantly differentially abundant in plasma from stage II PDAC versus controls. Although none of the miRNAs individually outperformed the currently used serologic biomarker for PDAC, carbohydrate antigen 19-9 (CA19-9), combining the miRNAs with CA 19-9 improved AUCs from 0.89 (95% CI, 0.81-0.95) for CA 19-9 alone to 0.92 (95% CI, 0.86-0.97), 0.94 (95% CI, 0.89-0.98), and 0.92 (95% CI, 0.87-0.97), respectively. Gene set enrichment analyses of transcripts correlated with high and low expression of the three miRNAs in The Cancer Genome Atlas PDAC sample set. These miRNA biomarkers, assayed in limited volume plasma together with CA19-9, discriminate stage II PDAC from controls with good sensitivity and specificity. Unbiased profiling of larger cohorts should help develop an informative early detection biomarker assay for diagnostic settings. PREVENTION RELEVANCE: Development of minimally invasive biomarker assays for detection of premalignant disease and early-stage pancreatic cancer is key to improving patient survival. This study describes a limited volume plasma miRNA biomarker assay that can detect early-stage resectable pancreatic cancer in clinical samples necessary for effective prevention and clinical intervention. ©2021 American Association for Cancer Research.

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Year:  2021        PMID: 33893071      PMCID: PMC8818322          DOI: 10.1158/1940-6207.CAPR-20-0303

Source DB:  PubMed          Journal:  Cancer Prev Res (Phila)        ISSN: 1940-6215


  61 in total

Review 1.  Mechanisms of regulation of mature miRNAs.

Authors:  Benjamin P Towler; Christopher I Jones; Sarah F Newbury
Journal:  Biochem Soc Trans       Date:  2015-12       Impact factor: 5.407

2.  mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues.

Authors:  Stephen W Eichhorn; Huili Guo; Sean E McGeary; Ricard A Rodriguez-Mias; Chanseok Shin; Daehyun Baek; Shu-Hao Hsu; Kalpana Ghoshal; Judit Villén; David P Bartel
Journal:  Mol Cell       Date:  2014-09-25       Impact factor: 17.970

Review 3.  Surgery for Pancreatic Cancer.

Authors:  Thomas E Clancy
Journal:  Hematol Oncol Clin North Am       Date:  2015-05-30       Impact factor: 3.722

4.  High sensitivity and specificity of CA 19-9 for pancreatic carcinoma in comparison to chronic pancreatitis. Serological and immunohistochemical findings.

Authors:  F Safi; R Roscher; R Bittner; B Schenkluhn; H P Dopfer; H G Beger
Journal:  Pancreas       Date:  1987       Impact factor: 3.327

5.  Inactivation of miR-34a by aberrant CpG methylation in multiple types of cancer.

Authors:  Dmitri Lodygin; Valery Tarasov; Alexey Epanchintsev; Carola Berking; Tatjana Knyazeva; Henrike Körner; Piotr Knyazev; Joachim Diebold; Heiko Hermeking
Journal:  Cell Cycle       Date:  2008-08-01       Impact factor: 4.534

6.  Recent Trends in the Incidence and Survival of Stage 1A Pancreatic Cancer: A Surveillance, Epidemiology, and End Results Analysis.

Authors:  Amanda L Blackford; Marcia Irene Canto; Alison P Klein; Ralph H Hruban; Michael Goggins
Journal:  J Natl Cancer Inst       Date:  2020-11-01       Impact factor: 13.506

7.  Definitive Characterization of CA 19-9 in Resectable Pancreatic Cancer Using a Reference Set of Serum and Plasma Specimens.

Authors:  Brian B Haab; Ying Huang; Seetharaman Balasenthil; Katie Partyka; Huiyuan Tang; Michelle Anderson; Peter Allen; Aaron Sasson; Herbert Zeh; Karen Kaul; Doron Kletter; Shaokui Ge; Marshall Bern; Richard Kwon; Ivan Blasutig; Sudhir Srivastava; Marsha L Frazier; Subrata Sen; Michael A Hollingsworth; Jo Ann Rinaudo; Ann M Killary; Randall E Brand
Journal:  PLoS One       Date:  2015-10-02       Impact factor: 3.240

8.  DIANA-miRPath v3.0: deciphering microRNA function with experimental support.

Authors:  Ioannis S Vlachos; Konstantinos Zagganas; Maria D Paraskevopoulou; Georgios Georgakilas; Dimitra Karagkouni; Thanasis Vergoulis; Theodore Dalamagas; Artemis G Hatzigeorgiou
Journal:  Nucleic Acids Res       Date:  2015-05-14       Impact factor: 16.971

9.  Evaluation of commercially available small RNASeq library preparation kits using low input RNA.

Authors:  Ashish Yeri; Amanda Courtright; Kirsty Danielson; Elizabeth Hutchins; Eric Alsop; Elizabeth Carlson; Michael Hsieh; Olivia Ziegler; Avash Das; Ravi V Shah; Joel Rozowsky; Saumya Das; Kendall Van Keuren-Jensen
Journal:  BMC Genomics       Date:  2018-05-05       Impact factor: 3.969

Review 10.  Imaging diagnosis and staging of pancreatic ductal adenocarcinoma: a comprehensive review.

Authors:  Khaled Y Elbanna; Hyun-Jung Jang; Tae Kyoung Kim
Journal:  Insights Imaging       Date:  2020-04-25
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  2 in total

1.  Methylation of Tumor Suppressive miRNAs in Plasma from Patients With Pancreaticobiliary Diseases.

Authors:  Koushiro Ohtsubo; Kunio Miyake; Sachiko Arai; Koji Fukuda; Chiaki Suzuki; Hiroshi Kotani; Azusa Tanimoto; Akihiro Nishiyama; Shigeki Nanjo; Kaname Yamashita; Shinji Takeuchi; Seiji Yano
Journal:  Cancer Diagn Progn       Date:  2022-05-03

Review 2.  Circulating Nucleic Acids as Novel Biomarkers for Pancreatic Ductal Adenocarcinoma.

Authors:  Ryan McGowan; Áine Sally; Anthony McCabe; Brian Michael Moran; Karen Finn
Journal:  Cancers (Basel)       Date:  2022-04-17       Impact factor: 6.575

  2 in total

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