Literature DB >> 33891175

Anaerotalea alkaliphila gen. nov., sp. nov., an alkaliphilic, anaerobic, fermentative bacterium isolated from a terrestrial mud volcano.

Anastasia Frolova1, A Yu Merkel2, A A Novikov3, E A Bonch-Osmolovskaya2, A I Slobodkin2.   

Abstract

Diversity of extremophilic microorganisms in mud volcanoes is largely unexplored. Here, we report the isolation of a novel alkaliphilic, mesophilic, fermentative bacterium (strain F-3apT) from a terrestrial mud volcano located at the Taman peninsula, Russia. Cells of strain F-3apT are Gram-stain-positive non-motile rods. The formation of endospores is not observed. The temperature range for growth is 14-42 °C, with an optimum at 37 °C. The pH range for growth is 7.5-11.0, with an optimum at pH 9.0. The isolate utilizes various organic polymeric substances, organic acids, carbohydrates, and proteinaceous compounds. The end products of glucose fermentation are ethanol, CO2, and H2. The major cellular fatty acids of strain F-3apT are C16:0, C16:1, and C14:0. Phylogenetic analysis reveals that strain F-3apT belongs to the order Clostridiales, with less than 91% of 16S rRNA gene sequence similarity to any species with a validly published name. The total size of the genome of strain F-3apT is 2.98 Mb, and a genomic DNA G + C content is 56.78 mol%. The whole-genome phylogenetic analysis confirms that strain F-3apT forms a distinct lineage within Clostridia. We propose to assign strain F-3apT to a new species of a novel genus Anaerotalea alkaliphila gen. nov., sp. nov. The type strain is F-3apT (= KCTC 15917 T = VKM B-3406 T).

Entities:  

Keywords:  Alkaliphile; Anaerobe; Clostridia; Ethanol fermentation; Firmicutes; Mud volcano

Year:  2021        PMID: 33891175     DOI: 10.1007/s00792-021-01229-w

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  33 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

4.  Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative.

Authors:  Maria Anisimova; Olivier Gascuel
Journal:  Syst Biol       Date:  2006-08       Impact factor: 15.683

5.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

6.  Vallitalea pronyensis sp. nov., isolated from a marine alkaline hydrothermal chimney.

Authors:  Fatma Ben Aissa; Anne Postec; Gaël Erauso; Claude Payri; Bernard Pelletier; Moktar Hamdi; Bernard Ollivier; Marie-Laure Fardeau
Journal:  Int J Syst Evol Microbiol       Date:  2014-01-09       Impact factor: 2.747

7.  Metabolic stratification driven by surface and subsurface interactions in a terrestrial mud volcano.

Authors:  Ting-Wen Cheng; Yung-Hsin Chang; Sen-Lin Tang; Ching-Hung Tseng; Pei-Wen Chiang; Kai-Ti Chang; Chih-Hsien Sun; Yue-Gau Chen; Hung-Chi Kuo; Chun-Ho Wang; Pao-Hsuan Chu; Sheng-Rong Song; Pei-Ling Wang; Li-Hung Lin
Journal:  ISME J       Date:  2012-06-28       Impact factor: 10.302

8.  Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes.

Authors:  Maria Anisimova; Manuel Gil; Jean-François Dufayard; Christophe Dessimoz; Olivier Gascuel
Journal:  Syst Biol       Date:  2011-05-03       Impact factor: 15.683

9.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

10.  trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.

Authors:  Salvador Capella-Gutiérrez; José M Silla-Martínez; Toni Gabaldón
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.