Literature DB >> 33890467

A Simple Explicit-Solvent Model of Polyampholyte Phase Behaviors and Its Ramifications for Dielectric Effects in Biomolecular Condensates.

Jonas Wessén1, Tanmoy Pal1, Suman Das1, Yi-Hsuan Lin1,2, Hue Sun Chan1.   

Abstract

Biomolecular condensates such as membraneless organelles, underpinned by liquid-liquid phase separation (LLPS), are important for physiological function, with electrostatics, among other interaction types, being a prominent force in their assembly. Charge interactions of intrinsically disordered proteins (IDPs) and other biomolecules are sensitive to the aqueous dielectric environment. Because the relative permittivity of protein is significantly lower than that of water, the interior of an IDP condensate is expected to be a relatively low-dielectric regime, which aside from its possible functional effects on client molecules should facilitate stronger electrostatic interactions among the scaffold IDPs. To gain insight into this LLPS-induced dielectric heterogeneity, addressing in particular whether a low-dielectric condensed phase entails more favorable LLPS than that posited by assuming IDP electrostatic interactions are uniformly modulated by the higher dielectric constant of the pure solvent, we consider a simplified multiple-chain model of polyampholytes immersed in explicit solvents that are either polarizable or possess a permanent dipole. Notably, simulated phase behaviors of these systems exhibit only minor to moderate differences from those obtained using implicit-solvent models with a uniform relative permittivity equals to that of pure solvent. Buttressed by theoretical treatments developed here using random phase approximation and polymer field-theoretic simulations, these observations indicate a partial compensation of effects between favorable solvent-mediated interactions among the polyampholytes in the condensed phase and favorable polyampholyte-solvent interactions in the dilute phase, often netting only a minor enhancement of overall LLPS propensity from the very dielectric heterogeneity that arises from the LLPS itself. Further ramifications of this principle are discussed.

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Year:  2021        PMID: 33890467     DOI: 10.1021/acs.jpcb.1c00954

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Assembly of model postsynaptic densities involves interactions auxiliary to stoichiometric binding.

Authors:  Yi-Hsuan Lin; Haowei Wu; Bowen Jia; Mingjie Zhang; Hue Sun Chan
Journal:  Biophys J       Date:  2021-10-09       Impact factor: 4.033

2.  Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy.

Authors:  Jerelle A Joseph; Aleks Reinhardt; Anne Aguirre; Pin Yu Chew; Kieran O Russell; Jorge R Espinosa; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Comput Sci       Date:  2021-11-22

3.  Calculating Binodals and Interfacial Tension of Phase-Separated Condensates from Molecular Simulations with Finite-Size Corrections.

Authors:  Konstantinos Mazarakos; Sanbo Qin; Huan-Xiang Zhou
Journal:  Methods Mol Biol       Date:  2023

Review 4.  Rules of Physical Mathematics Govern Intrinsically Disordered Proteins.

Authors:  Kingshuk Ghosh; Jonathan Huihui; Michael Phillips; Austin Haider
Journal:  Annu Rev Biophys       Date:  2022-02-04       Impact factor: 19.763

Review 5.  What are the distinguishing features and size requirements of biomolecular condensates and their implications for RNA-containing condensates?

Authors:  Julie D Forman-Kay; Jonathon A Ditlev; Michael L Nosella; Hyun O Lee
Journal:  RNA       Date:  2021-11-12       Impact factor: 4.942

6.  Analytical Solution to the Flory-Huggins Model.

Authors:  Daoyuan Qian; Thomas C T Michaels; Tuomas P J Knowles
Journal:  J Phys Chem Lett       Date:  2022-08-17       Impact factor: 6.888

  6 in total

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