| Literature DB >> 33882025 |
Mohammad Nayeem Hasan1, Najmul Haider2, Florian L Stigler3, Rumi Ahmed Khan4, David McCoy5, Alimuddin Zumla6,7, Richard A Kock2, Md Jamal Uddin1.
Abstract
The objective of this study was to evaluate the trend of reported case fatality rate (rCFR) of COVID-19 over time, using globally reported COVID-19 cases and mortality data. We collected daily COVID-19 diagnoses and mortality data from the WHO's daily situation reports dated January 1 to December 31, 2020. We performed three time-series models [simple exponential smoothing, auto-regressive integrated moving average, and automatic forecasting time-series (Prophet)] to identify the global trend of rCFR for COVID-19. We used beta regression models to investigate the association between the rCFR and potential predictors of each country and reported incidence rate ratios (IRRs) of each variable. The weekly global cumulative COVID-19 rCFR reached a peak at 7.23% during the 17th week (April 22-28, 2020). We found a positive and increasing trend for global daily rCFR values of COVID-19 until the 17th week (pre-peak period) and then a strong declining trend up until the 53rd week (post-peak period) toward 2.2% (December 29-31, 2020). In pre-peak of rCFR, the percentage of people aged 65 and above and the prevalence of obesity were significantly associated with the COVID-19 rCFR. The declining trend of global COVID-19 rCFR was not merely because of increased COVID-19 testing, because COVID-19 tests per 1,000 population had poor predictive value. Decreasing rCFR could be explained by an increased rate of infection in younger people or by the improvement of health care management, shielding from infection, and/or repurposing of several drugs that had shown a beneficial effect on reducing fatality because of COVID-19.Entities:
Mesh:
Year: 2021 PMID: 33882025 PMCID: PMC8176487 DOI: 10.4269/ajtmh.20-1496
Source DB: PubMed Journal: Am J Trop Med Hyg ISSN: 0002-9637 Impact factor: 2.345
Figure 1.The changes of global weekly cumulative reported case-fatality rate (rCFR) of COVID-19 (top) with the weekly cumulative rCFR in different WHO regions. The peak is observed in the 17th epidemiological week (April 22–28), which is also dominated by WHO regions PAHO, EMRO, and EURO). AFRO = African Region; PAHO = Region of the Americas; SEARO = South-East Asia Region; EURO = European Region; EMRO = Eastern Mediterranean Region; WPRO = Western Pacific Region. This figure appears in color at www.ajtmh.org.
Figure 2.The reported case-fatality rate (rCFR) of COVID-19 in different countries or territories of the world, January 1, 2020 to December 31, 2020 (data in log scale). This figure appears in color at www.ajtmh.org.
The summary of SES, ARIMA, automatic forecasting time-series model (Prophet), M–K trend, and Sen’s slope analysis
| Method & Period | R2 | RMSE | MAE |
|---|---|---|---|
| Simple exponential smoothing | |||
| Overall | 98.17% | 0.23 | 0.11 |
| Auto-regressive integrated moving average | |||
| Overall ARIMA (0,2,1) | 98.98% | 0.17 | 0.05 |
| Automatic forecasting time-series model | |||
| Overall | 96.26% | 0.33 | 0.18 |
| Mann–Kendall trend analysis | tau | ||
| Before peak | 0.93 | < 0.001 | |
| After peak | −1.0 | < 0.001 | |
| Sen’s slop test | Sen’s Slope | 95% CI | |
| Before peak | 0.39 | 0.32 to 0.45 | |
| After peak | −0.12 | −0.15 to −0.10 | |
ARIMA = auto-regressive integrated moving average; CFR = case fatality rate; M–K = Mann–Kendall; rCFR = reported case-fatality rate; MAE = mean absolute error; RMSE = root mean square error; SES = simple exponential smoothing. Prophet is the automatic forecasting time-series model. The SES, ARIMA, and Prophet models used daily cumulative CFR data whereas the M–K trend analysis and Sen’s slop used weekly cumulative CFR data. The Kendall’s Tau value permits a comparison of the strength of correlation between two data series (here, week of the year 2020 and rCFR).[28]
Before peak = COVID-19 data from first week to 17th week (April 22–28, 2020).
After peak = COVID-19 data from 18th week (after peak week) to 53rd week (December 29–31, 2020).
Figure 3.Top: Observed and predicted daily worldwide daily reported case-fatality rate (rCFR) using a simple exponential smoothing (SES) model. Middle: Observed and predicted daily worldwide daily cumulative rCFR using an auto-regressive integrated moving average (ARIMA) model. Bottom: Observed and predicted daily worldwide daily cumulative rCFR using an automatic forecasting time-series model (Prophet). Black dots = observed data; the blue line = predictive CFR; the shaded area = 95% confidence interval of predicted CFR. This figure appears in color at www.ajtmh.org.
Factors associated with rCFR of COVID-19 using beta regression model
| Variables | Before peak | After peak | ||||
|---|---|---|---|---|---|---|
| IRR | 95% CI | IRR | 95% CI | |||
| The percentage of people aged 65 and above | 1.01 | 0.98–1.03 | 0.749 | |||
| Population density | ||||||
| COVID-19 total tests (/1000) | 0.99 | 0.98–1.01 | 0.144 | |||
| GHSI | 1.01 | 0.98–1.02 | 0.778 | |||
| GDP | ||||||
| WGI | ||||||
| Obesity (%) | 1.01 | 1.00–1.03 | 0.104 | |||
| Adjusted pseudo- | 0.54 | 0.37 | ||||
CI = confidence interval; GDP = Gross Domestic Product; GHSI = Global Health Security Index; IRR = incidence rate ratio; rCFR = reported case fatality rate; WGI = Worldwide Governance Indicators. The IRR of 1.05 for the “percentage of people aged 65 and above” indicates that countries with 1% additional people ≥ 65 years old have an increased risk of rCFR by 5%. The data were collected for the dates of April 26, 2020 for the pre-peak period and December 31, 2020 for post-peak period. The values in bold letter indicate significant at 5% level.
Before peak = COVID-19 data from 1st week to 17th week (April 22–28, 2020).
After peak = COVID-19 data from 18th week (after peak week) to 53rd week (December 29–31, 2020).