Literature DB >> 33880096

Learning How to Code While Analyzing an Open Access Electrophysiology Dataset.

Ashley Juavinett1.   

Abstract

Conducting neuroscience research increasingly requires proficiency in coding and the ability to manipulate and analyze large datasets. However, these skills are often not included in typical neurobiology courses, partially because they are seen as accessory rather than central, and partially because of the barriers to entry. Therefore, this lesson plan aims to provide an introduction to coding in Python, a free and user-friendly programming language, for instructors and students alike. In this lesson, students edit Python code in the Jupyter Notebook coding environment to interact with cutting-edge electrophysiology data from the Allen Institute for Brain Science. Students can run their own experiments with these data to compare cell types in mice and humans. Along the way, they gain exposure to Python coding and the role of coding in the field of neuroscience.
Copyright © 2020 Faculty for Undergraduate Neuroscience.

Entities:  

Keywords:  Allen Institute; Jupyter Notebooks; Python; big data; coding; electrophysiology; neuronal diversity; patch clamping

Year:  2020        PMID: 33880096      PMCID: PMC8040835     

Source DB:  PubMed          Journal:  J Undergrad Neurosci Educ        ISSN: 1544-2896


  2 in total

1.  Pandemic Teaching: Using the Allen Cell Types Database for Final Semester Projects in an Undergraduate Neurophysiology Lab Course.

Authors:  Yi-Yun Ho; Andrea Roeser; Gwenda Law; Bruce R Johnson
Journal:  J Undergrad Neurosci Educ       Date:  2021-12-24

2.  The Simpsons Neuron: A Case Study Exploring Neuronal Coding and the Scientific Method for Introductory and Advanced Neuroscience Courses.

Authors:  Katharine M Cammack; Thomas R Reppert; Denise R Cook-Snyder
Journal:  J Undergrad Neurosci Educ       Date:  2021-12-24
  2 in total

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