Literature DB >> 33877495

The use of an integrative approach to improve accuracy of species identification and detection of new species in studies of stream fish diversity.

Luiz Henrique Garcia Pereira1, Jerson Rogelio Chanchay Castro2, Pilar Mireya Huatatoca Vargas2, Jose Alejandro Morales Gomez2, Claudio Oliveira3.   

Abstract

In this study, we made an inventory of the stream and headwater ichthyofauna of the left bank of the Itaipu Dam Reservoir, located in the lower part of the Upper Paraná River basin, using an integrative approach of molecular and morphological data. The area is located in the western portion of the Paraná state in Brazil, in an area of about 8,000 km2 highly impacted by deforestation and intensive agriculture. For taxonomic identification of species, we used an identification key combined with the DNA barcoding approach. We found 48 species belonging to six orders, 13 families, and 37 genera. The Siluriformes and Characiformes were the most representative orders (75%) and the Characidae was the most representative family (20.8%). Nine species prevailed in this region, making up to 86% of all specimens collected. The integrative approach proved to be useful by allowing the unambiguous identification of all species, including those cases in which morphological characters were not conclusive for species identification, cases of cryptic species, and species with high morphological plasticity. In addition, the integrative approach highlighted six to 13 new putative species depending on the approach considered. Our study provides a relevant contribution to the knowledge of fish diversity in a poorly studied area of the Paraná River basin. We showed that the use of an integrative approach in inventory studies improves species identification and the discovery of new, cryptic, and overlooked species, being a powerful and necessary tool to quantify biodiversity.

Entities:  

Keywords:  Checklist; Conservation; DNA barcoding; Fish distribution; Fishes; Paraná River basin

Year:  2021        PMID: 33877495     DOI: 10.1007/s10709-021-00118-6

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  14 in total

Review 1.  Four years of DNA barcoding: current advances and prospects.

Authors:  Lise Frézal; Raphael Leblois
Journal:  Infect Genet Evol       Date:  2008-06-03       Impact factor: 3.342

2.  Genetic calibration of species diversity among North America's freshwater fishes.

Authors:  Julien April; Richard L Mayden; Robert H Hanner; Louis Bernatchez
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

3.  ABGD, Automatic Barcode Gap Discovery for primary species delimitation.

Authors:  N Puillandre; A Lambert; S Brouillet; G Achaz
Journal:  Mol Ecol       Date:  2011-08-29       Impact factor: 6.185

4.  DNA barcodes identify marine fishes of São Paulo State, Brazil.

Authors:  Amanda de Oliveira Ribeiro; Rodrigo Antunes Caires; Tatiane Casagrande Mariguela; Luiz Henrique Garcia Pereira; Robert Hanner; Claudio Oliveira
Journal:  Mol Ecol Resour       Date:  2012-09-08       Impact factor: 7.090

5.  Integrative taxonomy supports new candidate fish species in a poorly studied neotropical region: the Jequitinhonha River Basin.

Authors:  Marina Lages Pugedo; Francisco Ricardo de Andrade Neto; Tiago Casarim Pessali; José Luís Olivan Birindelli; Daniel Cardoso Carvalho
Journal:  Genetica       Date:  2016-05-12       Impact factor: 1.082

6.  Urinary MHPG: improved tricyclic antidepressant drug selection in clinical practice.

Authors: 
Journal:  Med J Aust       Date:  1979-09-08       Impact factor: 7.738

7.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

8.  Integrative taxonomy detects cryptic and overlooked fish species in a neotropical river basin.

Authors:  Laís Carvalho Gomes; Tiago Casarim Pessali; Naiara Guimarães Sales; Paulo Santos Pompeu; Daniel Cardoso Carvalho
Journal:  Genetica       Date:  2015-07-04       Impact factor: 1.082

9.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

Review 10.  Freshwater biodiversity: importance, threats, status and conservation challenges.

Authors:  David Dudgeon; Angela H Arthington; Mark O Gessner; Zen-Ichiro Kawabata; Duncan J Knowler; Christian Lévêque; Robert J Naiman; Anne-Hélène Prieur-Richard; Doris Soto; Melanie L J Stiassny; Caroline A Sullivan
Journal:  Biol Rev Camb Philos Soc       Date:  2005-12-12
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  1 in total

1.  Phylogeography of Sarmarutilus rubilio (Cypriniformes: Leuciscidae): Complex Genetic Structure, Clues to a New Cryptic Species and Further Insights into Roaches Phylogeny.

Authors:  Gerardo Petrosino; Lorenzo Tancioni; Martina Turani; Arnold Rakaj; Luca Ciuffardi; Anna Rita Rossi
Journal:  Genes (Basel)       Date:  2022-06-15       Impact factor: 4.141

  1 in total

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