Literature DB >> 33876331

Genome-wide identification of the GATA transcription factor family and their expression patterns under temperature and salt stress in Aspergillus oryzae.

Chunmiao Jiang1, Gongbo Lv1, Jinxin Ge1, Bin He1, Zhe Zhang1, Zhihong Hu1, Bin Zeng2.   

Abstract

GATA transcription factors (TFs) are involved in the regulation of growth processes and various environmental stresses. Although GATA TFs involved in abiotic stress in plants and some fungi have been analyzed, information regarding GATA TFs in Aspergillus oryzae is extremely poor. In this study, we identified and functionally characterized seven GATA proteins from A. oryzae 3.042 genome, including a novel AoSnf5 GATA TF with 20-residue between the Cys-X2-Cys motifs which was found in Aspergillus GATA TFs for the first time. Phylogenetic analysis indicated that these seven A. oryzae GATA TFs could be classified into six subgroups. Analysis of conserved motifs demonstrated that Aspergillus GATA TFs with similar motif compositions clustered in one subgroup, suggesting that they might possess similar genetic functions, further confirming the accuracy of the phylogenetic relationship. Furthermore, the expression patterns of seven A. oryzae GATA TFs under temperature and salt stresses indicated that A. oryzae GATA TFs were mainly responsive to high temperature and high salt stress. The protein-protein interaction network of A. oryzae GATA TFs revealed certain potentially interacting proteins. The comprehensive analysis of A. oryzae GATA TFs will be beneficial for understanding their biological function and evolutionary features and provide an important starting point to further understand the role of GATA TFs in the regulation of distinct environmental conditions in A. oryzae.

Entities:  

Keywords:  Aspergillus oryzae; GATA transcription factors; Gene expression; Salt stress; Temperature stress

Year:  2021        PMID: 33876331     DOI: 10.1186/s13568-021-01212-w

Source DB:  PubMed          Journal:  AMB Express        ISSN: 2191-0855            Impact factor:   3.298


  33 in total

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Journal:  Biochem J       Date:  2000-03-01       Impact factor: 3.857

Review 2.  The VeA regulatory system and its role in morphological and chemical development in fungi.

Authors:  Ana M Calvo
Journal:  Fungal Genet Biol       Date:  2008-03-31       Impact factor: 3.495

3.  The iron-responsive, GATA-type transcription factor Cir1 influences mating in Cryptococcus neoformans.

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Journal:  Mol Cells       Date:  2010-11-25       Impact factor: 5.034

4.  The GATA transcription factors GLN3 and GAT1 link TOR to salt stress in Saccharomyces cerevisiae.

Authors:  J L Crespo; K Daicho; T Ushimaru; M N Hall
Journal:  J Biol Chem       Date:  2001-07-16       Impact factor: 5.157

Review 5.  Cell biology of the Koji mold Aspergillus oryzae.

Authors:  Katsuhiko Kitamoto
Journal:  Biosci Biotechnol Biochem       Date:  2015-03-17       Impact factor: 2.043

6.  Changes in selected physical property and enzyme activity of rice and barley koji during fermentation and storage.

Authors:  Allison Bechman; Robert D Phillips; Jinru Chen
Journal:  J Food Sci       Date:  2012-05-14       Impact factor: 3.167

7.  Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.

Authors:  Priyanka Gupta; Kamlesh K Nutan; Sneh L Singla-Pareek; Ashwani Pareek
Journal:  Front Plant Sci       Date:  2017-11-13       Impact factor: 5.753

8.  The role of the GATA transcription factor AreB in regulation of nitrogen and carbon metabolism in Aspergillus nidulans.

Authors:  Patrycja Chudzicka-Ormaniec; Maria Macios; Michał Koper; Gareth D Weedall; Mark X Caddick; Piotr Weglenski; Agnieszka Dzikowska
Journal:  FEMS Microbiol Lett       Date:  2019-03-01       Impact factor: 2.742

9.  The fungal pathogen Aspergillus fumigatus regulates growth, metabolism, and stress resistance in response to light.

Authors:  Kevin K Fuller; Carol S Ringelberg; Jennifer J Loros; Jay C Dunlap
Journal:  MBio       Date:  2013-03-26       Impact factor: 7.867

Review 10.  Biological Roles Played by Sphingolipids in Dimorphic and Filamentous Fungi.

Authors:  Caroline Mota Fernandes; Gustavo H Goldman; Maurizio Del Poeta
Journal:  mBio       Date:  2018-05-15       Impact factor: 7.867

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  1 in total

1.  Comprehensive Comparative Analysis of the GATA Transcription Factors in Four Rosaceae Species and Phytohormonal Response in Chinese Pear (Pyrus bretschneideri) Fruit.

Authors:  Muhammad Aamir Manzoor; Irfan Ali Sabir; Iftikhar Hussain Shah; Han Wang; Zhao Yu; Faiz Rasool; Muhammad Zaid Mazhar; Shoaib Younas; Muhammad Abdullah; Yongping Cai
Journal:  Int J Mol Sci       Date:  2021-11-19       Impact factor: 5.923

  1 in total

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