Literature DB >> 33873594

Evolutionary dynamics of nickel hyperaccumulation in Alyssum revealed by its nrDNA analysis.

A Mengoni1, A J M Baker2, M Bazzicalupo1, R D Reeves3, N Adigüzel4, E Chianni5, F Galardi5, R Gabbrielli5, C Gonnelli5.   

Abstract

•   Molecular phylogeny based on ribosomal internal transcribed spacer (ITS) sequences was studied to investigate the phyletic relationships among some nickel (Ni)-hyperaccumulating and nonhyperaccumulating species of the genus Alyssum in relation to their geographic distribution and Ni-hyperaccumulating phenotype. •   Thirty-seven samples belonging to 32 taxa were analysed by sequencing the polymerase chain reaction-amplified ITS region and performing neighbor joining, maximum parsimony and maximum likelihood phylogenetic analyses. •   The ITS region in the sampled species varied from 221 to 307 bp of ITS1 and from 194 to 251 bp of ITS2. A total of 765 characters was used to infer the phylogeny and the average nucleotide variation detected was 15.15%. •   Nickel-hyperaccumulation could have been lost or acquired independently more than once during the speciation of the genus. The geographical location of species could not be related to phylogenetic affinities.

Entities:  

Keywords:  Alyssum; evolution; heavy metals; hyperaccumulation; internal transcribed spacers; molecular phylogeny; nickel

Year:  2003        PMID: 33873594     DOI: 10.1046/j.1469-8137.2003.00837.x

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  6 in total

1.  Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae.

Authors:  B G Baldwin
Journal:  Mol Phylogenet Evol       Date:  1992-03       Impact factor: 4.286

2.  Multiple sequence alignment with hierarchical clustering.

Authors:  F Corpet
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

3.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

4.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

5.  Genetic diversity and heavy metal tolerance in populations of Silene paradoxa L. (Caryophyllaceae): a random amplified polymorphic DNA analysis.

Authors:  A Mengoni; C Gonnelli; F Galardi; R Gabbrielli; M Bazzicalupo
Journal:  Mol Ecol       Date:  2000-09       Impact factor: 6.185

6.  The molecular physiology of heavy metal transport in the Zn/Cd hyperaccumulator Thlaspi caerulescens.

Authors:  N S Pence; P B Larsen; S D Ebbs; D L Letham; M M Lasat; D F Garvin; D Eide; L V Kochian
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

  6 in total
  1 in total

1.  Intraspecific Variation in Nickel Tolerance and Hyperaccumulation among Serpentine and Limestone Populations of Odontarrhena serpyllifolia (Brassicaceae: Alysseae) from the Iberian Peninsula.

Authors:  A Joseph Pollard; Grace L McCartha; Celestino Quintela-Sabarís; Thomas A Flynn; Maria K Sobczyk; J Andrew C Smith
Journal:  Plants (Basel)       Date:  2021-04-19
  1 in total

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