Literature DB >> 33871692

Effects of Different Continuous Cropping Years on Bacterial Community and Diversity of Cucumber Rhizosphere Soil in Solar-Greenhouse.

Yang Li1, Jingliang Chi1, Jing Ao1, Xiaomei Gao1, Xiaohui Liu1, Yulu Sun1, Weiwei Zhu2.   

Abstract

The rhizosphere soils from 1, 3, 5, and 7 years of cucumber continuous cropping in solar-greenhouse were used as the research objects. The region of bacterial 16S rRNA was analyzed by Illumina MiSeq high-throughput sequencing technology. The effect of continuous cropping years on the microbial community structure and diversity in cucumber soil in the greenhouse was investigated. The physical and chemical properties of soil and the activities of urease and catalase were determined. The results showed that cucumber crop succession for different years affected the community composition of the bacteria at the phylum level, and the abundance of Proteobacteria, Chloroflexi, Gemmatimonadetes, Patescibacteria and Firmicutes gradually increased, while Actinobacteria in the soil significantly decreased. Among the top 15 significantly different genera, with the extension of successive years, the relative abundance of most genera in bacteria decreased after a small increase in year 3. The diversity results indicated that soil samples from continuous cropping for 7 years had the lowest community diversity. PICRUSt analysis showed a decreasing trend in soil bacterial function as the cucumber crop succession age increased. In environmental factor clustering analysis, the soil bacterial community was significantly correlated with pH, available nitrogen (AN), soil urease (SUR) and available phosphorus (AP), and the effect on the bacterial community was expressed as SUR > AP > AN > pH.

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Year:  2021        PMID: 33871692     DOI: 10.1007/s00284-021-02485-x

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  34 in total

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Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

2.  UPARSE: highly accurate OTU sequences from microbial amplicon reads.

Authors:  Robert C Edgar
Journal:  Nat Methods       Date:  2013-08-18       Impact factor: 28.547

3.  Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

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Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

Review 4.  High-throughput sequencing technologies.

Authors:  Jason A Reuter; Damek V Spacek; Michael P Snyder
Journal:  Mol Cell       Date:  2015-05-21       Impact factor: 17.970

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Journal:  Bioresour Technol       Date:  2011-02-24       Impact factor: 9.642

6.  Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.

Authors:  Melanie Schirmer; Umer Z Ijaz; Rosalinda D'Amore; Neil Hall; William T Sloan; Christopher Quince
Journal:  Nucleic Acids Res       Date:  2015-01-13       Impact factor: 16.971

Review 7.  Recent progress on the molecular breeding of Cucumis sativus L. in China.

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Journal:  Theor Appl Genet       Date:  2019-11-21       Impact factor: 5.699

8.  Effect of optimal daily fertigation on migration of water and salt in soil, root growth and fruit yield of cucumber (Cucumis sativus L.) in solar-greenhouse.

Authors:  Xinshu Liang; Yinan Gao; Xiaoying Zhang; Yongqiang Tian; Zhenxian Zhang; Lihong Gao
Journal:  PLoS One       Date:  2014-01-27       Impact factor: 3.240

9.  Rapid Microbiome Changes in Freshly Deposited Cow Feces under Field Conditions.

Authors:  Kelvin Wong; Timothy I Shaw; Adelumola Oladeinde; Travis C Glenn; Brian Oakley; Marirosa Molina
Journal:  Front Microbiol       Date:  2016-04-13       Impact factor: 5.640

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  3 in total

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2.  Changes in microbial community and enzyme activity in soil under continuous pepper cropping in response to Trichoderma hamatum MHT1134 application.

Authors:  Tingting Mao; Xuanli Jiang
Journal:  Sci Rep       Date:  2021-11-03       Impact factor: 4.379

3.  Soil metabolomics and bacterial functional traits revealed the responses of rhizosphere soil bacterial community to long-term continuous cropping of Tibetan barley.

Authors:  Yuan Zhao; Youhua Yao; Hongyan Xu; Zhanling Xie; Jing Guo; Zhifan Qi; Hongchen Jiang
Journal:  PeerJ       Date:  2022-04-07       Impact factor: 2.984

  3 in total

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