Literature DB >> 33870855

Baseline cell proliferation rates and response to UV differ in lymphoblastoid cell lines derived from healthy individuals of extreme constitution types.

Sumita Chakraborty1,2,3,4, Sunanda Singhmar1,2,3,4, Dayanidhi Singh1,2,3,4, Mahua Maulik2,5, Rutuja Patil6, Satyam Kumar Agrawal1,2,7, Anushree Mishra3, Madeeha Ghazi3,4, Archana Vats1,2, Vivek T Natarajan3,4, Sanjay Juvekar6, Bhavana Prasher1,2,3,4, Mitali Mukerji1,2,3,4.   

Abstract

Differences in human phenotypes and susceptibility to complex diseases are an outcome of genetic and environmental interactions. This is evident in diseases that progress through a common set of intermediate patho-endophenotypes. Precision medicine aims to delineate molecular players for individualized and early interventions. Functional studies of lymphoblastoid cell line (LCL) model of phenotypically well-characterized healthy individuals can help deconvolute and validate these molecular mechanisms. In this study, LCLs are developed from eight healthy individuals belonging to three extreme constitution types, deep phenotyped on the basis of Ayurveda. LCLs were characterized by karyotyping and immunophenotyping. Growth characteristics and response to UV were studied in these LCLs. Significant differences in cell proliferation rates were observed between the contrasting groups such that one type (Kapha) proliferates significantly slower than the other two (Vata, Pitta). In response to UV, one of the fast growing groups (Vata) shows higher cell death but recovers its numbers due to an inherent higher rates of proliferation. This study reveals that baseline differences in cell proliferation could be a key to understanding the survivability of cells under UV stress. Variability in baseline cellular phenotypes not only explains the cellular basis of different constitution types but can also help set priors during the design of an individualized therapy with DNA damaging agents. This is the first study of its kind that shows variability of intermediate patho-phenotypes among healthy individuals with potential implications in precision medicine.

Entities:  

Keywords:  Intermediate patho-phenotypes; UV response; ayurgenomics; cell proliferation; lymphoblastoid cell lines; prakriti

Mesh:

Substances:

Year:  2021        PMID: 33870855      PMCID: PMC8168715          DOI: 10.1080/15384101.2021.1909884

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  37 in total

Review 1.  Phenomics: the next challenge.

Authors:  David Houle; Diddahally R Govindaraju; Stig Omholt
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

Review 2.  Trans-Omics: How To Reconstruct Biochemical Networks Across Multiple 'Omic' Layers.

Authors:  Katsuyuki Yugi; Hiroyuki Kubota; Atsushi Hatano; Shinya Kuroda
Journal:  Trends Biotechnol       Date:  2016-01-21       Impact factor: 19.536

3.  Stimulation of cell division by membrane-active agents.

Authors:  L O Ingram; W D Fisher
Journal:  Biochem Biophys Res Commun       Date:  1973-01-23       Impact factor: 3.575

Review 4.  Solar UV irradiation and dermal photoaging.

Authors:  M Wlaschek; I Tantcheva-Poór; L Naderi; W Ma; L A Schneider; Z Razi-Wolf; J Schüller; K Scharffetter-Kochanek
Journal:  J Photochem Photobiol B       Date:  2001-10       Impact factor: 6.252

5.  Cell cycle regulation of human DNA repair and chromatin remodeling genes.

Authors:  Robin Mjelle; Siv Anita Hegre; Per Arne Aas; Geir Slupphaug; Finn Drabløs; Pål Saetrom; Hans E Krokan
Journal:  DNA Repair (Amst)       Date:  2015-03-28

6.  Understanding the association between the human gut, oral and skin microbiome and the Ayurvedic concept of prakriti.

Authors:  Diptaraj Chaudhari; Dhiraj Dhotre; Dhiraj Agarwal; Arun Gondhali; Anand Nagarkar; Vikas Lad; Ulhas Patil; Sanjay Juvekar; Vilas Sinkar; Yogesh Shouche
Journal:  J Biosci       Date:  2019-10       Impact factor: 1.826

7.  Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs.

Authors:  Xiaoling Zhang; Hinco J Gierman; Daniel Levy; Andrew Plump; Radu Dobrin; Harald H H Goring; Joanne E Curran; Matthew P Johnson; John Blangero; Stuart K Kim; Christopher J O'Donnell; Valur Emilsson; Andrew D Johnson
Journal:  BMC Genomics       Date:  2014-06-27       Impact factor: 3.969

8.  RAD51 interconnects between DNA replication, DNA repair and immunity.

Authors:  Souparno Bhattacharya; Kalayarasan Srinivasan; Salim Abdisalaam; Fengtao Su; Prithvi Raj; Igor Dozmorov; Ritu Mishra; Edward K Wakeland; Subroto Ghose; Shibani Mukherjee; Aroumougame Asaithamby
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

9.  The dark genome and pleiotropy: challenges for precision medicine.

Authors:  Steve D M Brown; Heena V Lad
Journal:  Mamm Genome       Date:  2019-08       Impact factor: 2.957

10.  Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits.

Authors:  Pradeep Tiwari; Rintu Kutum; Tavpritesh Sethi; Ankita Shrivastava; Bhushan Girase; Shilpi Aggarwal; Rutuja Patil; Dhiraj Agarwal; Pramod Gautam; Anurag Agrawal; Debasis Dash; Saurabh Ghosh; Sanjay Juvekar; Mitali Mukerji; Bhavana Prasher
Journal:  PLoS One       Date:  2017-10-05       Impact factor: 3.240

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  2 in total

1.  Heart rate variability during head-up tilt shows inter-individual differences among healthy individuals of extreme Prakriti types.

Authors:  Ritu Rani; Prathiban Rengarajan; Tavpritesh Sethi; Bharat Krushna Khuntia; Arvind Kumar; Deep Shikha Punera; Deepika Singh; Bhushan Girase; Ankita Shrivastava; Sanjay K Juvekar; Bala Pesala; Mitali Mukerji; Kishore Kumar Deepak; Bhavana Prasher
Journal:  Physiol Rep       Date:  2022-09

2.  Whole Exome Sequencing in Healthy Individuals of Extreme Constitution Types Reveals Differential Disease Risk: A Novel Approach towards Predictive Medicine.

Authors:  Tahseen Abbas; Gaura Chaturvedi; P Prakrithi; Ankit Kumar Pathak; Rintu Kutum; Pushkar Dakle; Ankita Narang; Vijeta Manchanda; Rutuja Patil; Dhiraj Aggarwal; Bhushan Girase; Ankita Srivastava; Manav Kapoor; Ishaan Gupta; Rajesh Pandey; Sanjay Juvekar; Debasis Dash; Mitali Mukerji; Bhavana Prasher
Journal:  J Pers Med       Date:  2022-03-18
  2 in total

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