| Literature DB >> 33869286 |
Ying Ye1,2, Qinjin Dai3, Shuhong Li4, Jie He1,2, Hongbo Qi1,2.
Abstract
Ferroptosis is an iron-dependent, regulated form of cell death, and the process is complex, consisting of a variety of metabolites and biological molecules. Ovarian cancer (OC) is a highly malignant gynecologic tumor with a poor survival rate. However, the predictive role of ferroptosis-related genes in ovarian cancer prognosis remains unknown. In this study, we demonstrated that the 57 ferroptosis-related genes were expressed differently between ovarian cancer and normal ovarian tissue, and based on these genes, all OC cases can be well divided into 2 subgroups by applying consensus clustering. We utilized the least absolute shrinkage and selection operator (LASSO) cox regression model to develop a multigene risk signature from the TCGA cohort and then validated it in an OC cohort from the GEO database. A 5-gene signature was built and reveals a favorable predictive efficacy in both TCGA and GEO cohort (P < 0.001 and P = 0.03). The GO and KEGG analysis revealed that the differentially expressed genes (DEGs) between the low- and high-risk subgroup divided by our risk model were associated with tumor immunity, and lower immune status in the high-risk group was discovered. In conclusion, ferroptosis-related genes are vital factors predicting the prognosis of OC and could be a novel potential treatment target.Entities:
Keywords: ferroptosis; immune cell infiltration; ovarian cancer; overall survival; risk signature
Year: 2021 PMID: 33869286 PMCID: PMC8047312 DOI: 10.3389/fmolb.2021.645845
Source DB: PubMed Journal: Front Mol Biosci ISSN: 2296-889X
Figure 1Workflow diagraph of data collection and analysis.
Figure 2The Consensus clustering for 379 OC samples based on the DEGs. (A) PPI network showing the interactions of DEGs. (B) Consensus clustering matrix for k = 2. (C) PCA plot for the consensus clustering matrix. (D) Kaplan-Meier OS curves for the OC patients in the 2 clusters.
Figure 3Construction of risk signature for OCs in TCGA cohort. (A) Screen out of the OS-related genes with univariate cox regression analysis. (B) The correlation network of the OS-related genes. (C) Risk score for OCs. (D) PCA plot for OCs. (E) t-SNE analysis for OCs. (F) Kaplan-Meier curves for the OS of patients in the high- and low-risk group based on risk score. (G) Survival status for each patient. (H) ROC curves demonstrated the predictive efficiency. (I) Multi-indicator ROC curves for risk score, age and tumor grade.
Figure 4Validation of risk signature for OCs in GEO cohort. (A) Risk score for OCs. (B) PCA plot for OCs. (C) t-SNE analysis for OCs. (D) Kaplan-Meier curves for the OS of patients in GEO cohort. (E) The distributions of survival status. (F) Time-dependent ROC curves for OCs in GEO cohort.
Figure 5Univariate and multivariate Cox regression analyses of OS in TCGA and GEO cohort. (A) Heatmap and clinicopathologic features of the 5 ferroptosis-related genes. (B) Univariate analysis for TCGA cohort. (C) Multivariate analysis for TCGA cohort. (D) Univariate analysis for GEO cohort. (E) Multivariate analysis for GEO cohort.
Figure 6Functional analysis based on the DEGs between the two-risk group in TCGA cohort. (A,B) Bubble and barplot graph for GO enrichment. (C,D) Bubble and barplot graph for KEGG pathways. (E) Comparison of the infiltration of 16 immune cells between low- and high-risk group. (F) Comparison of the immune functions between low- and high-risk group.