Literature DB >> 33868895

Exploring the antidiabetic potential of compounds isolated from Anacardium occidentale using computational aproach: ligand-based virtual screening.

Victor Okoliko Ukwenya1, Sunday Aderemi Adelakun1, Olusola Olalekan Elekofehinti2.   

Abstract

Diabetes mellitus is becoming an important public health challenge worldwide and especially in developing nations. About 8.8 percent of the world adult population has been reported to have diabetes. Glutamine-fructose-6-phosphate amidotransferase 1 (GFAT1) catalyses the first committed step in the pathway for biosynthesis of hexosamines in mammals, and its inhibition has been thought to prevent hyperglycaemia. Dipeptidyl peptidase-4 (DPP-4), on the other hand, degrades hormone glucagon-like peptide-1 (GLP-1), an enzyme that plays a major role in the enhancement of glucose-dependent insulin secretion, making these two proteins candidate targets for diabetes. To find potential inhibitors of DPP-4 and GFAT1 from Anacardium occidentale using a computational approach, glide XP (extra precision) docking, Induced Fit Docking (IFD), Binding free energy of the compounds were determined against prepared crystal structure of DPP-4 and GFAT1 using the Maestro molecular interface of Schrödinger suites. The Lipinski's rule of five (RO5) and ADME properties of the compounds were assessed. Predictive models for both protein targets were built using AutoQSAR. This study identified 8 hit compounds. Most of these compounds passed the RO5 and were within the recommended range for defined ADME parameters. In addition, the predicted pIC50 for the hit compounds were promising. The results obtained from the present study can be used to design an antidiabetic drug. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s40203-021-00084-z.
© The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021.

Entities:  

Keywords:  DPP-4; Diabetes mellitus; GFAT1; Insulin; Molecular docking studies

Year:  2021        PMID: 33868895      PMCID: PMC8019409          DOI: 10.1007/s40203-021-00084-z

Source DB:  PubMed          Journal:  In Silico Pharmacol        ISSN: 2193-9616


  60 in total

1.  On the role of the crystal environment in determining protein side-chain conformations.

Authors:  Matthew P Jacobson; Richard A Friesner; Zhexin Xiang; Barry Honig
Journal:  J Mol Biol       Date:  2002-07-12       Impact factor: 5.469

2.  Ethnopharmacological study of plants sold for therapeutic purposes in public markets in Northeast Brazil.

Authors:  Vanessa de Carvalho Nilo Bitu; Valdeneide de Carvalho Nilo Bitu; Edinardo Fagner Ferreira Matias; Wenderson Pinheiro de Lima; Aline da Costa Portelo; Henrique Douglas Melo Coutinho; Irwin Rose Alencar de Menezes
Journal:  J Ethnopharmacol       Date:  2015-06-20       Impact factor: 4.360

3.  Multifunctional cytotoxic agents from Anacardium occidentale.

Authors:  Isao Kubo; Teruhiko Nitoda; Felismino E Tocoli; Ivan R Green
Journal:  Phytother Res       Date:  2011-01       Impact factor: 5.878

4.  Discovery of a metabolic pathway mediating glucose-induced desensitization of the glucose transport system. Role of hexosamine biosynthesis in the induction of insulin resistance.

Authors:  S Marshall; V Bacote; R R Traxinger
Journal:  J Biol Chem       Date:  1991-03-15       Impact factor: 5.157

5.  Identification of GFAT1-L, a novel splice variant of human glutamine: fructose-6-phosphate amidotransferase (GFAT1) that is expressed abundantly in skeletal muscle.

Authors:  M Niimi; T Ogawara; T Yamashita; Y Yamamoto; A Ueyama; T Kambe; T Okamoto; T Ban; H Tamanoi; K Ozaki; T Fujiwara; H Fukui; E I Takahashi; H Kyushiki; A Tanigami
Journal:  J Hum Genet       Date:  2001       Impact factor: 3.172

Review 6.  Inhibitors of dipeptidyl peptidase IV: a novel approach for the prevention and treatment of Type 2 diabetes?

Authors:  Carolyn F Deacon; Bo Ahrén; Jens J Holst
Journal:  Expert Opin Investig Drugs       Date:  2004-09       Impact factor: 6.206

7.  Crystal structure of human dipeptidyl peptidase IV in complex with a decapeptide reveals details on substrate specificity and tetrahedral intermediate formation.

Authors:  Kathleen Aertgeerts; Sheng Ye; Mike G Tennant; Michelle L Kraus; Joe Rogers; Bi-Ching Sang; Robert J Skene; David R Webb; G Sridhar Prasad
Journal:  Protein Sci       Date:  2004-01-10       Impact factor: 6.725

8.  Kaempferol and quercetin isolated from Euonymus alatus improve glucose uptake of 3T3-L1 cells without adipogenesis activity.

Authors:  Xian-Kang Fang; Jie Gao; Dan-Ni Zhu
Journal:  Life Sci       Date:  2008-01-11       Impact factor: 5.037

9.  Molecular dissection of the NH2-terminal signal/anchor sequence of rat dipeptidyl peptidase IV.

Authors:  W J Hong; D Doyle
Journal:  J Cell Biol       Date:  1990-08       Impact factor: 10.539

Review 10.  Anacardium Plants: Chemical,Nutritional Composition and Biotechnological Applications.

Authors:  Bahare Salehi; Mine Gültekin-Özgüven; Celale Kırkın; Beraat Özçelik; Maria Flaviana Bezerra Morais-Braga; Joara Nalyda Pereira Carneiro; Camila Fonseca Bezerra; Teresinha Gonçalves da Silva; Henrique Douglas Melo Coutinho; Benabdallah Amina; Lorene Armstrong; Zeliha Selamoglu; Mustafa Sevindik; Zubaida Yousaf; Javad Sharifi-Rad; Ali Mahmoud Muddathir; Hari Prasad Devkota; Miquel Martorell; Arun Kumar Jugran; Natália Martins; William C Cho
Journal:  Biomolecules       Date:  2019-09-09
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  2 in total

Review 1.  Antidiabetic Potential of Plants from the Caribbean Basin.

Authors:  Vanessa Méril-Mamert; Alejandro Ponce-Mora; Muriel Sylvestre; Genica Lawrence; Eloy Bejarano; Gerardo Cebrián-Torrejón
Journal:  Plants (Basel)       Date:  2022-05-20

2.  Therapeutic effects of aqueous extract of bioactive active component of Ageratum conyzoides on the ovarian-uterine and hypophysis-gonadal axis in rat with polycystic ovary syndrome: Histomorphometric evaluation and biochemical assessment.

Authors:  Sunday Aderemi Adelakun; Victor Okoliko Ukwenya; Akwu Bala Peter; Adewale Jacob Siyanbade; Comfort Oluwakorede Akinwumiju
Journal:  Metabol Open       Date:  2022-07-20
  2 in total

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