Literature DB >> 33866140

In silico analysis and prediction of transcription factors of the proteins interacting with astrocyte elevated gene-1.

Sushmitha Sriramulu1, Suman K Nandy2, Harsha Ganesan1, Antara Banerjee1, Surajit Pathak3.   

Abstract

Multifunctional in nature, the protein Astrocyte Elevated Gene-1 (AEG-1) controls several cancers through protein-protein interactions. Although, specific physiological processes and molecular functions linked with AEG-1 interactors remain unclear. In our present study, we procured the data of AEG-1 interacting proteins and evaluated their biological functions, associated pathways, and interaction networks using bioinformatic tools. A total of 112 proteins experimentally detected to interact with AEG-1 were collected from various public databases. DAVID 6.8 Online tool was utilized to identify the molecular functions, biological processes, cellular components that aid in understanding the physiological function of AEG-1 and its interactors in several cell types. With the help of integrated network analysis of AEG-1 interactors using Cytoscape 3.8.0 software, cross-talk between various proteins, and associated pathways were revealed. Additionally, the Enrichr online tool was used for performing enrichment of transcription factors of AEG-1 interactors' which further revealed a closely associated self-regulated interaction network of a variety of transcription factors that shape the expression of AEG-1 interacting proteins. As a whole, the study calls for better understanding and elucidation of the pathways and biological roles of both AEG-1 and its interactor proteins that might enable their application as biomarkers and therapeutic targets in various diseases in the very near future.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Astrocyte elevated gene-1; Interaction network; Localization; Pathways; Protein-protein interaction; Transcription factor

Year:  2021        PMID: 33866140     DOI: 10.1016/j.compbiolchem.2021.107478

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  1 in total

1.  Metadherin (MTDH) overexpression significantly correlates with advanced tumor grade and stages among colorectal cancer patients.

Authors:  Aimen Sultan; Namood-E Sahar; Syeda Kiran Riaz; Javeria Qadir; Shahzad Hussain Waqar; Farhan Haq; Tanwir Khaliq; Muhammad Faraz Arshad Malik
Journal:  Mol Biol Rep       Date:  2021-11-06       Impact factor: 2.316

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.