Literature DB >> 33858989

Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments.

Benjamin Vernot1, Elena I Zavala1, Asier Gómez-Olivencia2,3,4, Zenobia Jacobs5,6, Viviane Slon1,7,8, Fabrizio Mafessoni1, Frédéric Romagné1, Alice Pearson1, Martin Petr1, Nohemi Sala4,9, Adrián Pablos4,9, Arantza Aranburu2,3, José María Bermúdez de Castro9, Eudald Carbonell10,11, Bo Li5,6, Maciej T Krajcarz12, Andrey I Krivoshapkin13,14, Kseniya A Kolobova13, Maxim B Kozlikin13, Michael V Shunkov13, Anatoly P Derevianko13, Bence Viola15, Steffi Grote1, Elena Essel1, David López Herráez1, Sarah Nagel1, Birgit Nickel1, Julia Richter1, Anna Schmidt1, Benjamin Peter1, Janet Kelso1, Richard G Roberts5,6, Juan-Luis Arsuaga4,16, Matthias Meyer17.   

Abstract

Bones and teeth are important sources of Pleistocene hominin DNA, but are rarely recovered at archaeological sites. Mitochondrial DNA has been retrieved from cave sediments, but provides limited value for studying population relationships. We therefore developed methods for the enrichment and analysis of nuclear DNA from sediments, and applied them to cave deposits in western Europe and southern Siberia dated to between approximately 200,000 and 50,000 years ago. We detect a population replacement in northern Spain approximately 100,000 years ago, accompanied by a turnover of mitochondrial DNA. We also identify two radiation events in Neanderthal history during the early part of the Late Pleistocene. Our work lays the ground for studying the population history of ancient hominins from trace amounts of nuclear DNA in sediments.
Copyright © 2021, American Association for the Advancement of Science.

Entities:  

Year:  2021        PMID: 33858989     DOI: 10.1126/science.abf1667

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  13 in total

1.  Bone-free ancient DNA.

Authors:  Dorothy Clyde
Journal:  Nat Rev Genet       Date:  2021-06       Impact factor: 53.242

2.  Ancient DNA diffuses from human bones to cave stones.

Authors:  Mohamed S Sarhan; Achim Lehmkuhl; Rainer Straub; Adrian Tett; Günther Wieland; Michael Francken; Albert Zink; Frank Maixner
Journal:  iScience       Date:  2021-11-23

3.  Genetic insights into the social organization of Neanderthals.

Authors:  Laurits Skov; Stéphane Peyrégne; Divyaratan Popli; Leonardo N M Iasi; Thibaut Devièse; Viviane Slon; Elena I Zavala; Mateja Hajdinjak; Arev P Sümer; Steffi Grote; Alba Bossoms Mesa; David López Herráez; Birgit Nickel; Sarah Nagel; Julia Richter; Elena Essel; Marie Gansauge; Anna Schmidt; Petra Korlević; Daniel Comeskey; Anatoly P Derevianko; Aliona Kharevich; Sergey V Markin; Sahra Talamo; Katerina Douka; Maciej T Krajcarz; Richard G Roberts; Thomas Higham; Bence Viola; Andrey I Krivoshapkin; Kseniya A Kolobova; Janet Kelso; Matthias Meyer; Svante Pääbo; Benjamin M Peter
Journal:  Nature       Date:  2022-10-19       Impact factor: 69.504

4.  The intrusive nature of the Châtelperronian in the Iberian Peninsula.

Authors:  Joseba Rios-Garaizar; Eneko Iriarte; Lee J Arnold; Laura Sánchez-Romero; Ana B Marín-Arroyo; Aixa San Emeterio; Asier Gómez-Olivencia; Carflos Pérez-Garrido; Martina Demuro; Isidoro Campaña; Laurence Bourguignon; Alfonso Benito-Calvo; María J Iriarte; Arantza Aranburu; Amaia Arranz-Otaegi; Diego Garate; María Silva-Gago; Christelle Lahaye; Illuminada Ortega
Journal:  PLoS One       Date:  2022-03-30       Impact factor: 3.240

Review 5.  Genomics of Ancient Pathogens: First Advances and Prospects.

Authors:  Alexandra B Malyarchuk; Tatiana V Andreeva; Irina L Kuznetsova; Svetlana S Kunizheva; Maria S Protasova; Lev I Uralsky; Tatiana V Tyazhelova; Fedor E Gusev; Andrey D Manakhov; Evgeny I Rogaev
Journal:  Biochemistry (Mosc)       Date:  2022-03       Impact factor: 2.487

6.  Environmental DNA reveals arboreal cityscapes at the Ancient Maya Center of Tikal.

Authors:  David L Lentz; Trinity L Hamilton; Nicholas P Dunning; Eric J Tepe; Vernon L Scarborough; Stephanie A Meyers; Liwy Grazioso; Alison A Weiss
Journal:  Sci Rep       Date:  2021-06-16       Impact factor: 4.379

7.  Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave.

Authors:  Elena I Zavala; Zenobia Jacobs; Benjamin Vernot; Michael V Shunkov; Maxim B Kozlikin; Anatoly P Derevianko; Elena Essel; Cesare de Fillipo; Sarah Nagel; Julia Richter; Frédéric Romagné; Anna Schmidt; Bo Li; Kieran O'Gorman; Viviane Slon; Janet Kelso; Svante Pääbo; Richard G Roberts; Matthias Meyer
Journal:  Nature       Date:  2021-06-23       Impact factor: 49.962

8.  Ancient DNA Methods Improve Forensic DNA Profiling of Korean War and World War II Unknowns.

Authors:  Elena I Zavala; Jacqueline Tyler Thomas; Kimberly Sturk-Andreaggi; Jennifer Daniels-Higginbotham; Kerriann K Meyers; Suzanne Barrit-Ross; Ayinuer Aximu-Petri; Julia Richter; Birgit Nickel; Gregory E Berg; Timothy P McMahon; Matthias Meyer; Charla Marshall
Journal:  Genes (Basel)       Date:  2022-01-11       Impact factor: 4.096

Review 9.  Our Tangled Family Tree: New Genomic Methods Offer Insight into the Legacy of Archaic Admixture.

Authors:  K D Ahlquist; Mayra M Bañuelos; Alyssa Funk; Jiaying Lai; Stephen Rong; Fernando A Villanea; Kelsey E Witt
Journal:  Genome Biol Evol       Date:  2021-07-06       Impact factor: 3.416

10.  Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment.

Authors:  Pere Gelabert; Susanna Sawyer; Anders Bergström; Ashot Margaryan; Thomas C Collin; Tengiz Meshveliani; Anna Belfer-Cohen; David Lordkipanidze; Nino Jakeli; Zinovi Matskevich; Guy Bar-Oz; Daniel M Fernandes; Olivia Cheronet; Kadir T Özdoğan; Victoria Oberreiter; Robin N M Feeney; Mareike C Stahlschmidt; Pontus Skoglund; Ron Pinhasi
Journal:  Curr Biol       Date:  2021-07-12       Impact factor: 10.834

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