Literature DB >> 33858934

Metatranscriptomic Analysis Reveals SARS-CoV-2 Mutations in Wastewater of the Frankfurt Metropolitan Area in Southern Germany.

Shelesh Agrawal1, Laura Orschler2, Susanne Lackner2.   

Abstract

We report a sequencing analysis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA in wastewater samples collected in the Frankfurt metropolitan area of Germany. The majority of the detected mutations have been identified only in clinical genomes outside Frankfurt, indicating that the sequencing of SARS-CoV-2 RNA in wastewater can provide insights into emerging variants in a city.
Copyright © 2021 Agrawal et al.

Entities:  

Year:  2021        PMID： 33858934     DOI： 10.1128/MRA.00280-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

1.  Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale.

Authors:  Fabian Amman; Rudolf Markt; Lukas Endler; Sebastian Hupfauf; Benedikt Agerer; Anna Schedl; Lukas Richter; Melanie Zechmeister; Martin Bicher; Georg Heiler; Petr Triska; Matthew Thornton; Thomas Penz; Martin Senekowitsch; Jan Laine; Zsofia Keszei; Peter Klimek; Fabiana Nägele; Markus Mayr; Beatrice Daleiden; Martin Steinlechner; Harald Niederstätter; Petra Heidinger; Wolfgang Rauch; Christoph Scheffknecht; Gunther Vogl; Günther Weichlinger; Andreas Otto Wagner; Katarzyna Slipko; Amandine Masseron; Elena Radu; Franz Allerberger; Niki Popper; Christoph Bock; Daniela Schmid; Herbert Oberacher; Norbert Kreuzinger; Heribert Insam; Andreas Bergthaler
Journal:  Nat Biotechnol       Date:  2022-07-18       Impact factor: 68.164

2.  Evaluation of a Wastewater-Based Epidemiological Approach to Estimate the Prevalence of SARS-CoV-2 Infections and the Detection of Viral Variants in Disparate Oregon Communities at City and Neighborhood Scales.

Authors:  Blythe A Layton; Devrim Kaya; Christine Kelly; Kenneth J Williamson; Dana Alegre; Silke M Bachhuber; Peter G Banwarth; Jeffrey W Bethel; Katherine Carter; Benjamin D Dalziel; Mark Dasenko; Matthew Geniza; Andrea George; Anne-Marie Girard; Roy Haggerty; Kathryn A Higley; Denise M Hynes; Jane Lubchenco; Katherine R McLaughlin; F Javier Nieto; Aslan Noakes; Matthew Peterson; Adriana D Piemonti; Justin L Sanders; Brett M Tyler; Tyler S Radniecki
Journal:  Environ Health Perspect       Date:  2022-06-29       Impact factor: 11.035

3.  SARS-CoV-2 Whole-Genome Sequencing by Ion S5 Technology-Challenges, Protocol Optimization and Success Rates for Different Strains.

Authors:  Maria Szargut; Sandra Cytacka; Karol Serwin; Anna Urbańska; Romain Gastineau; Miłosz Parczewski; Andrzej Ossowski
Journal:  Viruses       Date:  2022-06-06       Impact factor: 5.818

4.  SARS-CoV-2 Whole-Genome Sequencing Using Oxford Nanopore Technology for Variant Monitoring in Wastewaters.

Authors:  Laure Barbé; Julien Schaeffer; Alban Besnard; Sarah Jousse; Sébastien Wurtzer; Laurent Moulin; Françoise S Le Guyader; Marion Desdouits
Journal:  Front Microbiol       Date:  2022-06-09       Impact factor: 6.064

Review 5.  A State-of-the-Art Scoping Review on SARS-CoV-2 in Sewage Focusing on the Potential of Wastewater Surveillance for the Monitoring of the COVID-19 Pandemic.

Authors:  G Bonanno Ferraro; C Veneri; P Mancini; M Iaconelli; E Suffredini; L Bonadonna; L Lucentini; A Bowo-Ngandji; C Kengne-Nde; D S Mbaga; G Mahamat; H R Tazokong; J T Ebogo-Belobo; R Njouom; S Kenmoe; G La Rosa
Journal:  Food Environ Virol       Date:  2021-11-02       Impact factor: 4.034

6.  High throughput sequencing based direct detection of SARS-CoV-2 fragments in wastewater of Pune, West India.

Authors:  Tanmay Dharmadhikari; Vinay Rajput; Rakeshkumar Yadav; Radhika Boargaonkar; Dhawal Patil; Saurabh Kale; Sanjay P Kamble; Syed G Dastager; Mahesh S Dharne
Journal:  Sci Total Environ       Date:  2021-10-22       Impact factor: 7.963

7.  Prevalence and circulation patterns of SARS-CoV-2 variants in European sewage mirror clinical data of 54 European cities.

Authors:  Shelesh Agrawal; Laura Orschler; Selina Schubert; Kira Zachmann; Leo Heijnen; Simona Tavazzi; Bernd Manfred Gawlik; Miranda de Graaf; Gertjan Medema; Susanne Lackner
Journal:  Water Res       Date:  2022-02-05       Impact factor: 11.236

8.  SARS-CoV-2 Testing of Aircraft Wastewater Shows That Mandatory Tests and Vaccination Pass before Boarding Did Not Prevent Massive Importation of Omicron Variant into Europe.

Authors:  Lorlane Le Targa; Nathalie Wurtz; Alexandre Lacoste; Gwilherm Penant; Priscilla Jardot; Alexandre Annessi; Philippe Colson; Bernard La Scola; Sarah Aherfi
Journal:  Viruses       Date:  2022-07-09       Impact factor: 5.818

9.  Microbiome Analysis for Wastewater Surveillance during COVID-19.

Authors:  Kyle D Brumfield; Menu Leddy; Moiz Usmani; Joseph A Cotruvo; Ching-Tzone Tien; Suzanne Dorsey; Karlis Graubics; Brian Fanelli; Isaac Zhou; Nathaniel Registe; Manoj Dadlani; Malinda Wimalarante; Dilini Jinasena; Rushan Abayagunawardena; Chiran Withanachchi; Anwar Huq; Antarpreet Jutla; Rita R Colwell
Journal:  mBio       Date:  2022-06-21       Impact factor: 7.786
  9 in total

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