Literature DB >> 33855974

Artificial intelligence for automating the measurement of histologic image biomarkers.

Toby C Cornish.   

Abstract

Artificial intelligence has been applied to histopathology for decades, but the recent increase in interest is attributable to well-publicized successes in the application of deep-learning techniques, such as convolutional neural networks, for image analysis. Recently, generative adversarial networks (GANs) have provided a method for performing image-to-image translation tasks on histopathology images, including image segmentation. In this issue of the JCI, Koyuncu et al. applied GANs to whole-slide images of p16-positive oropharyngeal squamous cell carcinoma (OPSCC) to automate the calculation of a multinucleation index (MuNI) for prognostication in p16-positive OPSCC. Multivariable analysis showed that the MuNI was prognostic for disease-free survival, overall survival, and metastasis-free survival. These results are promising, as they present a prognostic method for p16-positive OPSCC and highlight methods for using deep learning to measure image biomarkers from histopathologic samples in an inherently explainable manner.

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Year:  2021        PMID: 33855974      PMCID: PMC8262491          DOI: 10.1172/JCI147966

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  15 in total

1.  Deep Adversarial Training for Multi-Organ Nuclei Segmentation in Histopathology Images.

Authors:  Faisal Mahmood; Daniel Borders; Richard J Chen; Gregory N Mckay; Kevan J Salimian; Alexander Baras; Nicholas J Durr
Journal:  IEEE Trans Med Imaging       Date:  2020-10-28       Impact factor: 10.048

2.  Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma.

Authors:  Can F Koyuncu; Cheng Lu; Kaustav Bera; Zelin Zhang; Jun Xu; Paula Toro; German Corredor; Deborah Chute; Pingfu Fu; Wade L Thorstad; Farhoud Faraji; Justin A Bishop; Mitra Mehrad; Patricia D Castro; Andrew G Sikora; Lester Dr Thompson; R D Chernock; Krystle A Lang Kuhs; Jingqin Luo; Vlad Sandulache; David J Adelstein; Shlomo Koyfman; James S Lewis; Anant Madabhushi
Journal:  J Clin Invest       Date:  2021-04-15       Impact factor: 14.808

Review 3.  HPV in Head and Neck Cancer-30 Years of History.

Authors:  Stina Syrjänen; Jaana Rautava; Kari Syrjänen
Journal:  Recent Results Cancer Res       Date:  2017

Review 4.  Clinical Application of Image Analysis in Pathology.

Authors:  Toby C Cornish
Journal:  Adv Anat Pathol       Date:  2020-07       Impact factor: 3.875

5.  Bidirectional Mapping-Based Domain Adaptation for Nucleus Detection in Cross-Modality Microscopy Images.

Authors:  Fuyong Xing; Toby C Cornish; Tellen D Bennett; Debashis Ghosh
Journal:  IEEE Trans Med Imaging       Date:  2021-09-30       Impact factor: 11.037

6.  The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.

Authors:  Alex Zwanenburg; Martin Vallières; Mahmoud A Abdalah; Hugo J W L Aerts; Vincent Andrearczyk; Aditya Apte; Saeed Ashrafinia; Spyridon Bakas; Roelof J Beukinga; Ronald Boellaard; Marta Bogowicz; Luca Boldrini; Irène Buvat; Gary J R Cook; Christos Davatzikos; Adrien Depeursinge; Marie-Charlotte Desseroit; Nicola Dinapoli; Cuong Viet Dinh; Sebastian Echegaray; Issam El Naqa; Andriy Y Fedorov; Roberto Gatta; Robert J Gillies; Vicky Goh; Michael Götz; Matthias Guckenberger; Sung Min Ha; Mathieu Hatt; Fabian Isensee; Philippe Lambin; Stefan Leger; Ralph T H Leijenaar; Jacopo Lenkowicz; Fiona Lippert; Are Losnegård; Klaus H Maier-Hein; Olivier Morin; Henning Müller; Sandy Napel; Christophe Nioche; Fanny Orlhac; Sarthak Pati; Elisabeth A G Pfaehler; Arman Rahmim; Arvind U K Rao; Jonas Scherer; Muhammad Musib Siddique; Nanna M Sijtsema; Jairo Socarras Fernandez; Emiliano Spezi; Roel J H M Steenbakkers; Stephanie Tanadini-Lang; Daniela Thorwarth; Esther G C Troost; Taman Upadhaya; Vincenzo Valentini; Lisanne V van Dijk; Joost van Griethuysen; Floris H P van Velden; Philip Whybra; Christian Richter; Steffen Löck
Journal:  Radiology       Date:  2020-03-10       Impact factor: 29.146

Review 7.  The Application of Deep Learning in Cancer Prognosis Prediction.

Authors:  Wan Zhu; Longxiang Xie; Jianye Han; Xiangqian Guo
Journal:  Cancers (Basel)       Date:  2020-03-05       Impact factor: 6.639

Review 8.  Causability and explainability of artificial intelligence in medicine.

Authors:  Andreas Holzinger; Georg Langs; Helmut Denk; Kurt Zatloukal; Heimo Müller
Journal:  Wiley Interdiscip Rev Data Min Knowl Discov       Date:  2019-04-02
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