| Literature DB >> 33854592 |
Chunyu Zhang1, Long Wang1, Haitao Liu2, Gang Deng1, Pengfei Xu3, Yinqiu Tan1, Yang Xu1, Baohui Liu1, Qianxue Chen1, Daofeng Tian1.
Abstract
Background: ADPRH is a modulator of CD8+ T cell functions, and dysregulation of ADPRH has been identified to involve in carcinogenesis of cancers. However, the association of ADPRH with low grade glioma (LGG) remains unclear.Entities:
Keywords: CGGA; TCGA; biomarker; immune infiltration; low grade glioma
Year: 2021 PMID: 33854592 PMCID: PMC8040889 DOI: 10.7150/jca.51643
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
Figure 1Expression analysis of ADPRH. Differential expression analysis of ADPRH in GEPIA database (A), Rembrant (B), and Gravendeel (C) cohorts from GLIOVIS database and validated by real time PCR (rt-PCR). ADPRH expression was normalized to β-actin using the 2-ΔΔCt method (D). ADPRH expression significantly correlates with WHO grade of glioma (E-F). Immunochemistry staining of ADPRH in LGG and non-tumor brain tissues (G-H), magnification, 200×. IHC score of ADPRH in clinical tissues (I), non-tumor tissue, n = 6; low-grade glioma, n = 28. T, tumor; N, non-tumor.
Figure 2Kaplan-Meier (K-M) plots of the associations of ADPRH expression with OS in TCGA (A) and CGGA (B) cohorts and with PFS in TCGA (C) and GSE107850 datasets (D). OS, overall survival; PFS, progression-free survival.
Multivariate Cox regression analysis of OS of LGG in TCGA and CGGA cohorts
| Covariates | TCGA cohort (n=404) | CGGA cohort (n=552) | ||||
|---|---|---|---|---|---|---|
| HR | 95% CI | P | HR | 95% CI | P | |
| Grade (ref. WHO II) | 1.903 | 1.189-3.046 | 2.916 | 2.237-3.800 | ||
| Gender (ref. Female) | 1.166 | 0.776-1.753 | 0.460 | 0.955 | 0.752-1.214 | 0.709 |
| Age (continuous, years) | 1.053 | 1.034-1.072 | 1.007 | 0.996-1.018 | 0.244 | |
| IDH status (ref. Mutant) | 2.636 | 1.503-4.624 | 1.587 | 1.190-2.115 | ||
| ADPRH (continuous) | 2.837 | 1.759-4.575 | 1.633 | 1.359-1.955 | ||
OS, overall survival; HR, hazard ratio; CI, confidence interval.
Multivariate Cox regression analysis of PFS of LGG in TCGA and GSE107850 cohorts
| Covariates | TCGA cohort (n=404) | GSE107850 cohort (n=193) | ||||
|---|---|---|---|---|---|---|
| HR | 95% CI | P | HR | 95% CI | P | |
| Grade (ref. WHO II) | 1.071 | 0.759-1.512 | 0.697 | - | - | - |
| Gender (ref. Female) | 0.901 | 0.660-1.230 | 0.511 | 1.170 | 0.775-1.766 | 0.455 |
| Age (continuous, years) | 1.017 | 1.004-1.030 | 1.009 | 0.960-1.039 | ||
| IDH status (ref. Mutant) | 3.720 | 2.394-5.779 | 2.412 | 1.481-3.931 | ||
| ADPRH (continuous) | 1.701 | 1.191-2.430 | 1.697 | 1.096-2.626 | ||
PFS, progression-free survival; HR, hazard ratio; CI, confidence interval.
Figure 3Enrichment plots of gene set enrichment analysis (GSEA) using the TCGA gene expression profiles of LGG.
Figure 4Correlation of ADPRH expression with immune infiltration level in LGG. Comparison of ADPRH expression between the high and low immune score groups of LGG (A). ADPRH is significantly correlated to tumor purity and immune infiltration cells in LGG tissues (B).
Correlation analysis between ADPRH expression and related markers of immune cells using data in TIMER database
| Description | Gene markers | LGG | |||
|---|---|---|---|---|---|
| None | Purity | ||||
| Cor | P | Cor | P | ||
| CD8+ T cell | CD8A | 0.351 | *** | 0.259 | *** |
| CD8B | 0.376 | *** | 0.305 | *** | |
| CD45 | 0.788 | *** | 0.759 | *** | |
| T cell (general) | CD3D | 0.562 | *** | 0.525 | *** |
| CD3E | 0.63 | *** | 0.607 | *** | |
| CD2 | 0.63 | *** | 0.617 | *** | |
| B cell | CD19 | 0.462 | *** | 0.431 | *** |
| CD79A | 0.324 | *** | 0.331 | *** | |
| CD27 | 0.182 | *** | 0.205 | *** | |
| CD20 | 0.306 | *** | 0.279 | *** | |
| Monocyte | CD14 | 0.652 | *** | 0.633 | *** |
| CD115 (CSF1R) | 0.644 | *** | 0.585 | *** | |
| TAM | CCL2 | 0.563 | *** | 0.538 | *** |
| CD68 | 0.75 | *** | 0.725 | *** | |
| IL10 | 0.579 | *** | 0.549 | *** | |
| M1 Macrophage | INOS (NOS2) | -0.071 | ns | -0.099 | * |
| CD80 | 0.599 | *** | 0.618 | *** | |
| IRF5 | 0.726 | *** | 0.682 | *** | |
| IL6 | 0.523 | *** | 0.498 | *** | |
| CD64 (FCGR1A) | 0.704 | *** | 0.663 | *** | |
| M2 Macrophage | CD163 | 0.496 | *** | 0.511 | *** |
| CD206 | -0.041 | ns | -0.087 | ns | |
| VSIG4 | 0.617 | *** | 0.578 | *** | |
| MS4A4A | 0.604 | *** | 0.607 | *** | |
| Neutrophils | CD66b (CEACAM8) | -0.016 | ns | -0.014 | ns |
| CD11b (ITGAM) | 0.704 | *** | 0.655 | *** | |
| CD15 | 0.537 | *** | 0.493 | *** | |
| Natural killer cell | KIR2DL1 | 0.066 | ns | 0.088 | ns |
| KIR2DL3 | 0.224 | *** | 0.216 | *** | |
| KIR3DL1 | 0.055 | ns | 0.061 | ns | |
| KIR3DL2 | 0.239 | *** | 0.233 | *** | |
| CD56 | -0.408 | *** | -0.343 | *** | |
| CD335 (NKp46) | 0.142 | *** | 0.178 | *** | |
| Dendritic cell | BDCA-1 (CD1C) | 0.398 | *** | 0.399 | *** |
| BDCA-3 (CD141) | 0.382 | *** | 0.397 | *** | |
| BDCA-4 (NRP1) | 0.309 | *** | 0.379 | *** | |
| CD123 | 0.259 | *** | 0.236 | *** | |
| CD11c (ITGAX) | 0.676 | *** | 0.627 | *** | |
| Th1 | T-bet (TBX21) | 0.367 | *** | 0.397 | *** |
| STAT4 | -0.041 | ns | -0.12 | * | |
| STAT1 | 0.503 | *** | 0.512 | *** | |
| Th2 | GATA3 | 0.475 | *** | 0.443 | *** |
| STAT6 | 0.613 | *** | 0.536 | *** | |
| IL13 | -0.013 | ns | -0.016 | ns | |
| Tfh | BCL6 | 0.036 | ns | 0.093 | * |
| IL21 | 0.109 | * | 0.107 | * | |
| Th17 | STAT3 | 0.545 | *** | 0.582 | *** |
| IL17A | -0.034 | ns | -0.025 | ns | |
| Treg | FOXP3 | -0.093 | * | -0.082 | ns |
| CD25 | 0.323 | *** | 0.364 | *** | |
| CCR8 | 0.202 | *** | 0.203 | *** | |
| STAT5B | -0.078 | ns | 0.033 | ns | |
| T cell exhaustion | PD-1 (PDCD1) | 0.576 | *** | 0.562 | *** |
| CTLA4 | 0.21 | *** | 0.25 | *** | |
| LAG3 | 0.807 | *** | 0.777 | *** | |
| TIM-3 (HAVCR2) | 0.354 | *** | 0.382 | *** | |
LGG, low grade glioma; TAM, tumor-associated macrophage; Th, T helper cell; Tfh, Follicular helper T cell; Treg, regulatory T cell; Cor, R value of Spearman's correlation; None, correlation without adjustment; Purity, correlation adjusted by purity. ns, P > 0.05; *P < 0.05; **P < 0.01; ***P < 0.001.
Figure 5Correlation of ADPRH expression with marker genes of monocyte (A), tumor-associated macrophage (TAM) (B), M1 (C) and M2 macrophages (D) in LGG.