| Literature DB >> 33846892 |
Honglu Ji1, Huan Tong1, Jingge Wang1, Dan Yan2, Zangyi Liao3, Ying Kong1,4.
Abstract
With the expansion of the global novel coronavirus disease (COVID-19) pandemic, unprecedented interventions have been widely implemented in many countries, including China. In view of this scenario, this research aims to explore the effectiveness of population mobility restriction in alleviating epidemic transmission during different stages of the outbreak. Taking Shenzhen, a city with a large immigrant population in China, as a case study, the real-time reproduction number of COVID-19 is estimated by statistical methods to represent the dynamic spatiotemporal transmission pattern of COVID-19. Furthermore, migration data between Shenzhen and other provinces are collected to investigate the impact of nationwide population flow on near-real-time dynamic reproductive numbers. The results show that traffic flow control between populated cities has an inhibitory effect on urban transmission, but this effect is not significant in the late stage of the epidemic spread in China. This finding implies that the government should limit international and domestic population movement starting from the very early stage of the outbreak. This work confirms the effectiveness of travel restriction measures in the face of COVID-19 in China and provides new insight for densely populated cities in imposing intervention measures at various stages of the transmission cycle.Entities:
Keywords: COVID-19; Correlation analysis; Population mobility; Real-time reproduction number; Shenzhen
Mesh:
Year: 2021 PMID: 33846892 PMCID: PMC8041245 DOI: 10.1007/s10653-021-00920-3
Source DB: PubMed Journal: Environ Geochem Health ISSN: 0269-4042 Impact factor: 4.898
Summary statistics of , , , and estimated infected cases
| Variables | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Minimum | 5.00 | 3.00 | 0.00 | 0.00 | 3.63 | 3.70 | 3.69 | 3.63 | 3.63 |
| Maximum | 462.00 | 325.00 | 456.00 | 3.00 | 426.88 | 447.18 | 375.80 | 352.94 | 443.65 |
| Mean | 377.10 | 89.31 | 285.66 | 2.13 | 105.28 | 112.31 | 102.52 | 98.68 | 110.22 |
| Q3(.75) | 462.00 | 320.00 | 455.00 | 3.00 | 415.47 | 437.93 | 370.43 | 346.79 | 431.79 |
| Q1(.25) | 5.00 | 3.00 | 0.00 | 0.00 | 3.63 | 3.70 | 3.69 | 3.63 | 3.63 |
| Median | 420.00 | 30.50 | 393.50 | 3.00 | 32.52 | 33.36 | 32.84 | 32.52 | 32.52 |
| Stdev | 133.28 | 103.44 | 171.97 | 1.33 | 124.81 | 134.26 | 117.94 | 111.51 | 131.76 |
| Kurtosis | 2.53 | 0.02 | − 1.21 | − 1.03 | 0.44 | 0.40 | 0.02 | − 0.07 | 0.46 |
| Skewness | − 1.98 | 1.24 | − 0.71 | − 0.96 | 1.34 | 1.34 | 1.24 | 1.20 | 1.36 |
The definitions of , , , and are shown in Table 1, and _EG, _MLE, _SB, _TD, and _Epi represent the number of existing infected cases on day estimated by the EG, MLE, SB, TD and Epi methods, respectively.
Fig. 1Proportion map of the migration index of five regions and total areas into Shenzhen
Summary statistics of the interprovincial migration index into Shenzhen
| Variables | SZ_total | Hubei_SZ | Beijing_SZ | Hunan_SZ | Guangd_SZ | Guangx_SZ | Jiangxi_SZ |
|---|---|---|---|---|---|---|---|
| Minimum | 1.96 | 0.29 | 0.39 | 7.03 | 107.38 | 2.91 | 3.79 |
| Maximum | 10.47 | 69.68 | 7.91 | 121.45 | 782.33 | 84.99 | 62.09 |
| Mean | 5.03 | 14.21 | 1.26 | 39.17 | 321.33 | 27.50 | 22.23 |
| Q3(.75) | 9.03 | 67.85 | 7.09 | 96.13 | 654.69 | 75.18 | 47.55 |
| Q1(.25) | 1.96 | 0.29 | 0.39 | 7.03 | 107.38 | 2.91 | 3.79 |
| Median | 4.99 | 5.79 | 0.89 | 29.30 | 308.62 | 21.06 | 17.36 |
| Stdev | 1.43 | 19.33 | 1.39 | 23.76 | 129.85 | 18.60 | 13.17 |
| Kurtosis | 2.09 | 1.91 | 13.16 | 0.84 | 1.42 | 1.54 | − 0.31 |
| Skewness | 0.60 | 1.75 | 3.65 | 1.23 | 0.84 | 1.43 | 0.89 |
SZ_total, Hubei_SZ, Beijing_SZ, Hunan_SZ, Guangd_SZ, Guangx_SZ and Jiangxi_SZ refer to interprovincial migration index into Shenzhen for Total areas, Hubei, Beijing, Hunan, Guangdong, Guangxi and Jiangxi, respectively
Summary statistics of estimated by five methods and the width of the 95% confidence intervals
| Variables | EG_ | MLE_ | SB_ | TD_ | Epi_ | EG_CI_W | MLE_CI_W | SB_CI_W | TD_CI_W | Epi_CI_W |
|---|---|---|---|---|---|---|---|---|---|---|
| Minimum | 1.00 | 1.11 | 1.09 | 1.00 | 1.00 | 0.00 | 0.03 | 0.17 | 0.14 | 0.00 |
| Maximum | 9.07 | 16.13 | 3.68 | 6.89 | 9.93 | 31.98 | 21.96 | 6.56 | 4.60 | 6.97 |
| Mean | 2.13 | 2.81 | 1.62 | 1.57 | 2.14 | 2.12 | 0.94 | 0.71 | 0.40 | 0.43 |
| Q3(.75) | 8.72 | 10.41 | 3.43 | 6.67 | 7.83 | 18.14 | 10.43 | 5.40 | 3.32 | 4.21 |
| Q1(.25) | 1.00 | 1.11 | 1.09 | 1.00 | 1.00 | 0.00 | 0.03 | 0.17 | 0.14 | 0.00 |
| Median | 1.01 | 1.72 | 1.22 | 1.00 | 1.00 | 0.39 | 0.11 | 0.26 | 0.18 | 0.07 |
| Stdev | 2.44 | 2.77 | 0.78 | 1.46 | 2.29 | 5.11 | 2.93 | 1.23 | 0.72 | 1.07 |
| Kurtosis | 2.13 | 5.83 | 0.87 | 6.23 | 2.09 | 14.88 | 29.86 | 10.22 | 16.88 | 18.04 |
| Skewness | 1.96 | 2.33 | 1.56 | 2.73 | 1.90 | 3.65 | 5.10 | 3.23 | 4.02 | 4.03 |
EG_, MLE_, SB_, TD_, and Epi_ refer to estimated by the EG, MLE, SB, TD and Epi methods, respectively. EG_CI_W, MLE_CI_W, SB_CI_W, TD_CI_W, and Epi_CI_W represent the widths of their respective 95% confidence intervals.
Fig. 2Estimation of and 95% confidence intervals by five methods: a exponential growth method (EG); b maximum likelihood estimation (MLE); c sequential Bayesian method (SB); d time-dependent reproduction numbers (TD); e EpiEstim R package (Epi)
Fig. 3Existing infection cases for the actual data and estimated results based on . a The estimation period of EG starts on 19th January; b the estimation period of MLE starts on 19th January; c the estimation period of SB starts on 14th January; d the estimation period of TD starts on 13th January; e the estimation period of Epi starts on 21st January. Note that this figure presents data from 19th January to 3rd May
Fig. 4Width of confidence intervals resulting from the five methods
Summary statistics of the correlation between and the interprovincial migration index in Shenzhen from different regions
| Regions | Total areas | Guangdong | Hunan | Guangxi | Jiangxi | Hubei | Beijing |
|---|---|---|---|---|---|---|---|
| Mean | − 0.09 | − 0.03 | − 0.13 | − 0.19 | − 0.12 | 0.28 | 0.22 |
| Median | − 0.05 | − 0.04 | − 0.25 | − 0.26 | − 0.25 | 0.53 | 0.26 |
| Stdev | 0.41 | 0.37 | 0.59 | 0.60 | 0.61 | 0.61 | 0.48 |
| Kurtosis | − 0.86 | − 0.30 | − 1.49 | − 1.17 | − 1.50 | − 1.42 | − 1.03 |
| Skewness | − 0.12 | − 0.15 | 0.26 | 0.43 | 0.17 | − 0.42 | − 0.15 |
| Minimum | − 0.84 | − 0.79 | − 0.89 | − 0.94 | − 0.93 | − 0.85 | − 0.71 |
| Maximum | 0.85 | 0.86 | 0.83 | 0.93 | 0.87 | 0.98 | 0.97 |
| Q3(.75) | 0.53 | 0.61 | 0.82 | 0.90 | 0.83 | 0.98 | 0.95 |
| Q1(.25) | − 0.84 | − 0.79 | − 0.89 | − 0.94 | − 0.93 | − 0.85 | − 0.71 |
Fig. 5Correlation between and the migration index for total areas and Guangdong
Fig. 6Correlation between R and the migration index for Hunan, Guangxi and Jiangxi
Fig. 7Correlation between R and the migration index for Beijing
Fig. 8Correlation between R and the migration index for Hubei
Fig. 9Hypothesis test on correlation differences between neighbouring provinces: a Guangdong and Hunan; b Guangdong and Guangxi; c Guangdong and Jiangxi
Fig. 10Hypothesis test on correlation differences in Beijing or Hubei and the neighbouring provinces: a Hubei and Hunan; b Hubei and Guangxi; c Hubei and Jiangxi; d Beijing and Hunan; e Beijing and Guangxi; f Beijing and Jiangxi
Definitions of all variables and abbreviations
| Variable | Definition | Unit of measurement |
|---|---|---|
| Real-time production number | ||
| EG | The exponential growth method | |
| MLE | The maximum likelihood estimation | |
| SB | The sequential Bayesian method | |
| TD | The time-dependent reproduction numbers | |
| Epi | EpiEstim R package method | |
| Cumulative confirmed cases | People/day | |
| The number of existing infected cases on day | People/day | |
| The number of recovered cases on day | People/day | |
| The number of dead cases on day | People/day | |
| The number of susceptible to the infection on day | People/day | |
| The intrinsic growth rate of the exponential growth | ||
| The average duration of the infectious period | Day | |
| The serial interval | ||
| The shape parameter of SI distribution | ||
| The scale parameter of SI distribution | ||
| A discrete probability distribution with mean | ||
| The likelihood that case | ||
| The probability density function for the generation interval | ||
| The duration of the infectious period | Day |