Literature DB >> 33846635

Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce.

Tong Wei1, Rob van Treuren2, Xinjiang Liu1, Zhaowu Zhang1,3, Jiongjiong Chen4, Yang Liu1, Shanshan Dong5, Peinan Sun4, Ting Yang1, Tianming Lan1,6, Xiaogang Wang7, Zhouquan Xiong7, Yaqiong Liu8, Jinpu Wei8, Haorong Lu8, Shengping Han8, Jason C Chen8, Xuemei Ni1, Jian Wang1,9, Huanming Yang1,9, Xun Xu1,10, Hanhui Kuang4, Theo van Hintum11, Xin Liu12, Huan Liu13.   

Abstract

Lettuce (Lactuca sativa) is an important vegetable crop worldwide. Cultivated lettuce is believed to be domesticated from L. serriola; however, its origins and domestication history remain to be elucidated. Here, we sequenced a total of 445 Lactuca accessions, including major lettuce crop types and wild relative species, and generated a comprehensive map of lettuce genome variations. In-depth analyses of population structure and demography revealed that lettuce was first domesticated near the Caucasus, which was marked by loss of seed shattering. We also identified the genetic architecture of other domestication traits and wild introgressions in major resistance clusters in the lettuce genome. This study provides valuable genomic resources for crop breeding and sheds light on the domestication history of cultivated lettuce.

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Year:  2021        PMID: 33846635     DOI: 10.1038/s41588-021-00831-0

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  62 in total

1.  An SNP caused loss of seed shattering during rice domestication.

Authors:  Saeko Konishi; Takeshi Izawa; Shao Yang Lin; Kaworu Ebana; Yoshimichi Fukuta; Takuji Sasaki; Masahiro Yano
Journal:  Science       Date:  2006-04-13       Impact factor: 47.728

2.  Genomic analyses provide insights into the history of tomato breeding.

Authors:  Tao Lin; Guangtao Zhu; Junhong Zhang; Xiangyang Xu; Qinghui Yu; Zheng Zheng; Zhonghua Zhang; Yaoyao Lun; Shuai Li; Xiaoxuan Wang; Zejun Huang; Junming Li; Chunzhi Zhang; Taotao Wang; Yuyang Zhang; Aoxue Wang; Yancong Zhang; Kui Lin; Chuanyou Li; Guosheng Xiong; Yongbiao Xue; Andrea Mazzucato; Mathilde Causse; Zhangjun Fei; James J Giovannoni; Roger T Chetelat; Dani Zamir; Thomas Städler; Jingfu Li; Zhibiao Ye; Yongchen Du; Sanwen Huang
Journal:  Nat Genet       Date:  2014-10-12       Impact factor: 38.330

3.  NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis.

Authors:  Nobutaka Mitsuda; Akira Iwase; Hiroyuki Yamamoto; Masato Yoshida; Motoaki Seki; Kazuo Shinozaki; Masaru Ohme-Takagi
Journal:  Plant Cell       Date:  2007-01-19       Impact factor: 11.277

4.  Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod.

Authors:  Andrew Chen; Chengxia Li; Wei Hu; Mei Yee Lau; Huiqiong Lin; Nathan C Rockwell; Shelley S Martin; Judith A Jernstedt; J Clark Lagarias; Jorge Dubcovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-24       Impact factor: 11.205

5.  A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.

Authors:  Jianjian Qi; Xin Liu; Di Shen; Han Miao; Bingyan Xie; Xixiang Li; Peng Zeng; Shenhao Wang; Yi Shang; Xingfang Gu; Yongchen Du; Ying Li; Tao Lin; Jinhong Yuan; Xueyong Yang; Jinfeng Chen; Huiming Chen; Xingyao Xiong; Ke Huang; Zhangjun Fei; Linyong Mao; Li Tian; Thomas Städler; Susanne S Renner; Sophien Kamoun; William J Lucas; Zhonghua Zhang; Sanwen Huang
Journal:  Nat Genet       Date:  2013-10-20       Impact factor: 38.330

6.  Rice domestication by reducing shattering.

Authors:  Changbao Li; Ailing Zhou; Tao Sang
Journal:  Science       Date:  2006-03-09       Impact factor: 47.728

7.  Parallel domestication of the Shattering1 genes in cereals.

Authors:  Zhongwei Lin; Xianran Li; Laura M Shannon; Cheng-Ting Yeh; Ming L Wang; Guihua Bai; Zhao Peng; Jiarui Li; Harold N Trick; Thomas E Clemente; John Doebley; Patrick S Schnable; Mitchell R Tuinstra; Tesfaye T Tesso; Frank White; Jianming Yu
Journal:  Nat Genet       Date:  2012-05-13       Impact factor: 38.330

8.  RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis.

Authors:  Lei Zhang; Wenqing Su; Rong Tao; Weiyi Zhang; Jiongjiong Chen; Peiyao Wu; Chenghuan Yan; Yue Jia; Robert M Larkin; Dean Lavelle; Maria-Jose Truco; Sebastian Reyes Chin-Wo; Richard W Michelmore; Hanhui Kuang
Journal:  Nat Commun       Date:  2017-12-22       Impact factor: 14.919

9.  Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.

Authors:  Sebastian Reyes-Chin-Wo; Zhiwen Wang; Xinhua Yang; Alexander Kozik; Siwaret Arikit; Chi Song; Liangfeng Xia; Lutz Froenicke; Dean O Lavelle; María-José Truco; Rui Xia; Shilin Zhu; Chunyan Xu; Huaqin Xu; Xun Xu; Kyle Cox; Ian Korf; Blake C Meyers; Richard W Michelmore
Journal:  Nat Commun       Date:  2017-04-12       Impact factor: 14.919

10.  Characterization of four polymorphic genes controlling red leaf colour in lettuce that have undergone disruptive selection since domestication.

Authors:  Wenqing Su; Rong Tao; Wenye Liu; Changchun Yu; Zhen Yue; Shuping He; Dean Lavelle; Weiyi Zhang; Lei Zhang; Guanghui An; Yu Zhang; Qun Hu; Robert M Larkin; Richard W Michelmore; Hanhui Kuang; Jiongjiong Chen
Journal:  Plant Biotechnol J       Date:  2019-08-08       Impact factor: 9.803

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Journal:  Theor Appl Genet       Date:  2022-06-08       Impact factor: 5.574

2.  Comparative Analysis of Italian Lettuce (Lactuca sativa L. var. ramose) Transcriptome Profiles Reveals the Molecular Mechanism on Exogenous Melatonin Preventing Cadmium Toxicity.

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3.  Comparative chloroplast genome analyses of cultivated spinach and two wild progenitors shed light on the phylogenetic relationships and variation.

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4.  Comprehensive Annotation and Functional Exploration of MicroRNAs in Lettuce.

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Authors:  Jérémy Salinier; Véronique Lefebvre; Didier Besombes; Hélène Burck; Mathilde Causse; Marie-Christine Daunay; Catherine Dogimont; Juliette Goussopoulos; Christophe Gros; Brigitte Maisonneuve; Louis McLeod; Fatiha Tobal; Rebecca Stevens
Journal:  Plants (Basel)       Date:  2022-01-27

Review 6.  Chicoric Acid: Natural Occurrence, Chemical Synthesis, Biosynthesis, and Their Bioactive Effects.

Authors:  Min Yang; Chao Wu; Tianxi Zhang; Lei Shi; Jian Li; Hongbao Liang; Xuzhen Lv; Fengtang Jing; Lu Qin; Tianlun Zhao; Chenxi Wang; Guangxu Liu; Shuai Feng; Feng Li
Journal:  Front Chem       Date:  2022-06-23       Impact factor: 5.545

7.  High-Altitude Genetic Selection and Genome-Wide Association Analysis of Yield-Related Traits in Elymus sibiricus L. Using SLAF Sequencing.

Authors:  Zongyu Zhang; Yuying Zheng; Junchao Zhang; Na Wang; Yanrong Wang; Wenhui Liu; Shiqie Bai; Wengang Xie
Journal:  Front Plant Sci       Date:  2022-06-21       Impact factor: 6.627

8.  The upregulated LsKN1 gene transforms pinnately to palmately lobed leaves through auxin, gibberellin, and leaf dorsiventrality pathways in lettuce.

Authors:  Menglu Wang; Dean Lavelle; Changchun Yu; Weiyi Zhang; Jiongjiong Chen; Xin Wang; Richard W Michelmore; Hanhui Kuang
Journal:  Plant Biotechnol J       Date:  2022-07-02       Impact factor: 13.263

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  10 in total

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