Literature DB >> 33846390

Computing inelastic neutron scattering spectra from molecular dynamics trajectories.

Thomas F Harrelson1,2, Makena Dettmann3, Christoph Scherer4, Denis Andrienko4, Adam J Moulé1, Roland Faller5.   

Abstract

Inelastic neutron scattering (INS) provides a weighted density of phonon modes. Currently, INS spectra can only be interpreted for perfectly crystalline materials because of high computational cost for electronic simulations. INS has the potential to provide detailed morphological information if sufficiently large volumes and appropriate structural variety are simulated. Here, we propose a method that allows direct comparison between INS data with molecular dynamics simulations, a simulation method that is frequently used to simulate semicrystalline/amorphous materials. We illustrate the technique by analyzing spectra of a well-studied conjugated polymer, poly(3-hexylthiophene-2,5-diyl) (P3HT) and conclude that our technique provides improved volume and structural variety, but that the classical force field requires improvement before the morphology can be accurately interpreted.

Entities:  

Year:  2021        PMID: 33846390     DOI: 10.1038/s41598-021-86771-5

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  5 in total

1.  A time-of-flight backscattering spectrometer at the Spallation Neutron Source, BASIS.

Authors:  E Mamontov; K W Herwig
Journal:  Rev Sci Instrum       Date:  2011-08       Impact factor: 1.523

2.  Simulation of Inelastic Neutron Scattering Spectra Using OCLIMAX.

Authors:  Y Q Cheng; L L Daemen; A I Kolesnikov; A J Ramirez-Cuesta
Journal:  J Chem Theory Comput       Date:  2019-02-20       Impact factor: 6.006

3.  Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.

Authors:  Jeffery B Klauda; Richard M Venable; J Alfredo Freites; Joseph W O'Connor; Douglas J Tobias; Carlos Mondragon-Ramirez; Igor Vorobyov; Alexander D MacKerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

Review 4.  Water Determines the Structure and Dynamics of Proteins.

Authors:  Marie-Claire Bellissent-Funel; Ali Hassanali; Martina Havenith; Richard Henchman; Peter Pohl; Fabio Sterpone; David van der Spoel; Yao Xu; Angel E Garcia
Journal:  Chem Rev       Date:  2016-05-17       Impact factor: 60.622

5.  Phonon properties of graphene derived from molecular dynamics simulations.

Authors:  Emmanuel N Koukaras; George Kalosakas; Costas Galiotis; Konstantinos Papagelis
Journal:  Sci Rep       Date:  2015-08-28       Impact factor: 4.379

  5 in total

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