Literature DB >> 33846375

A study of differential circRNA and lncRNA expressions in COVID-19-infected peripheral blood.

Yingping Wu1, Tiejun Zhao2, Riqiang Deng3, Xiaoping Xia4, Bin Li1, Xunzhang Wang2.   

Abstract

To conquer the worldwide outbreak of COVID-19 virus, a large number of studies have been carried out on COVID-19 infection, transmission and treatment. However, few studies have been conducted from the perspectives of circRNA and lncRNA, which are known to be involved in regulating many life activities, such as immune tolerance and immune escapes, and hence may provide invaluable information in the emerging COVID-19 infection and recurrence. Moreover, exosomes has been reported to play an important role in COVID-19 recurrence, and thus may interact with the expression of circRNA and lncRNA. In this work, we sequenced circRNA, lncRNA and mRNA from recurrent COVID-19 patients and healthy people, and compared the differences. GO and KEGG enrichment analysis show that differentially expressed circRNA and lncRNA are mainly involved in the regulation of host cell cycle, apoptosis, immune inflammation, signaling pathway and other processes. The comparison to exosomes related databases shows that there are 114 differentially expressed circRNA, and 10 differentially expressed lncRNA related to exosomes. These studies provide reference for exploring circRNA and lncRNA to study the infection mechanism of COVID-19, their diagnostic and therapeutic values, as well as the possibility to employ them as biomarkers.

Entities:  

Year:  2021        PMID: 33846375     DOI: 10.1038/s41598-021-86134-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  33 in total

1.  The first two cases of 2019-nCoV in Italy: Where they come from?

Authors:  Marta Giovanetti; Domenico Benvenuto; Silvia Angeletti; Massimo Ciccozzi
Journal:  J Med Virol       Date:  2020-02-12       Impact factor: 2.327

2.  Clinical and computed tomographic imaging features of novel coronavirus pneumonia caused by SARS-CoV-2.

Authors:  Yu-Huan Xu; Jing-Hui Dong; Wei-Min An; Xiao-Yan Lv; Xiao-Ping Yin; Jian-Zeng Zhang; Li Dong; Xi Ma; Hong-Jie Zhang; Bu-Lang Gao
Journal:  J Infect       Date:  2020-02-25       Impact factor: 6.072

Review 3.  Coronavirus infections and immune responses.

Authors:  Geng Li; Yaohua Fan; Yanni Lai; Tiantian Han; Zonghui Li; Peiwen Zhou; Pan Pan; Wenbiao Wang; Dingwen Hu; Xiaohong Liu; Qiwei Zhang; Jianguo Wu
Journal:  J Med Virol       Date:  2020-02-07       Impact factor: 2.327

4.  Novel coronavirus: From discovery to clinical diagnostics.

Authors:  Tung Phan
Journal:  Infect Genet Evol       Date:  2020-01-30       Impact factor: 3.342

5.  Full-genome evolutionary analysis of the novel corona virus (2019-nCoV) rejects the hypothesis of emergence as a result of a recent recombination event.

Authors:  D Paraskevis; E G Kostaki; G Magiorkinis; G Panayiotakopoulos; G Sourvinos; S Tsiodras
Journal:  Infect Genet Evol       Date:  2020-01-29       Impact factor: 3.342

6.  Immunoinformatics-aided identification of T cell and B cell epitopes in the surface glycoprotein of 2019-nCoV.

Authors:  Vargab Baruah; Sujoy Bose
Journal:  J Med Virol       Date:  2020-03-03       Impact factor: 2.327

7.  Novel coronavirus, poor quarantine, and the risk of pandemic.

Authors:  S Khan; R Siddique; A Ali; M Xue; G Nabi
Journal:  J Hosp Infect       Date:  2020-02-11       Impact factor: 3.926

8.  The SARS-CoV-2 receptor ACE2 expression of maternal-fetal interface and fetal organs by single-cell transcriptome study.

Authors:  Mengmeng Li; Liang Chen; Jingxiao Zhang; Chenglong Xiong; Xiangjie Li
Journal:  PLoS One       Date:  2020-04-16       Impact factor: 3.240

Review 9.  Emerging coronaviruses: Genome structure, replication, and pathogenesis.

Authors:  Yu Chen; Qianyun Liu; Deyin Guo
Journal:  J Med Virol       Date:  2020-02-07       Impact factor: 2.327

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  20 in total

1.  Circular RNA Profiles in Viremia and ART Suppression Predict Competing circRNA-miRNA-mRNA Networks Exclusive to HIV-1 Viremic Patients.

Authors:  Dora Zucko; Abdullgadir Hayir; Kelsey Grinde; Kathleen Boris-Lawrie
Journal:  Viruses       Date:  2022-03-25       Impact factor: 5.818

Review 2.  Circular RNAs and Their Role in Exosomes.

Authors:  Zeping Han; Huafang Chen; Zhonghui Guo; Jian Shen; Wenfeng Luo; Fangmei Xie; Yu Wan; Shengbo Wang; Jianhao Li; Jinhua He
Journal:  Front Oncol       Date:  2022-04-28       Impact factor: 5.738

3.  Competing endogenous RNA network mediated by circ_3205 in SARS-CoV-2 infected cells.

Authors:  Cinzia Di Pietro; Guido Scalia; Michele Purrello; Davide Barbagallo; Concetta Ilenia Palermo; Cristina Barbagallo; Rosalia Battaglia; Angela Caponnetto; Vittoria Spina; Marco Ragusa
Journal:  Cell Mol Life Sci       Date:  2022-01-17       Impact factor: 9.261

Review 4.  A close-up view of dynamic biomarkers in the setting of COVID-19: Striking focus on cardiovascular system.

Authors:  Aysa Rezabakhsh; Seyyed-Reza Sadat-Ebrahimi; Alireza Ala; Seyed Mohammad Nabavi; Maciej Banach; Samad Ghaffari
Journal:  J Cell Mol Med       Date:  2021-12-11       Impact factor: 5.310

5.  Sequence complementarity between human noncoding RNAs and SARS-CoV-2 genes: What are the implications for human health?

Authors:  Rossella Talotta; Shervin Bahrami; Magdalena Janina Laska
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2021-10-15       Impact factor: 5.187

Review 6.  SARS-CoV-2, Cardiovascular Diseases, and Noncoding RNAs: A Connected Triad.

Authors:  Lucia Natarelli; Fabio Virgili; Christian Weber
Journal:  Int J Mol Sci       Date:  2021-11-12       Impact factor: 5.923

Review 7.  Non-Coding RNAs in COVID-19: Emerging Insights and Current Questions.

Authors:  Tobias Plowman; Dimitris Lagos
Journal:  Noncoding RNA       Date:  2021-08-31

8.  Co-Regulation of Protein Coding Genes by Transcription Factor and Long Non-Coding RNA in SARS-CoV-2 Infected Cells: An In Silico Analysis.

Authors:  Chinmay Saha; Sayantan Laha; Raghunath Chatterjee; Nitai P Bhattacharyya
Journal:  Noncoding RNA       Date:  2021-11-29

9.  Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2.

Authors:  Enrico Gaffo; Alessia Buratin; Anna Dal Molin; Stefania Bortoluzzi
Journal:  Brief Bioinform       Date:  2022-01-17       Impact factor: 11.622

Review 10.  Long noncoding RNAs in respiratory viruses: A review.

Authors:  Mina Mobini Kesheh; Shahab Mahmoudvand; Somayeh Shokri
Journal:  Rev Med Virol       Date:  2021-07-12       Impact factor: 11.043

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