Goranka Bilalbegović1, Aleksandar Maksimović2, Lynne A Valencic3,4, Susi Lehtola5. 1. Department of Physics, Faculty of Science, University of Zagreb, Bijenička cesta 32, 10000 Zagreb, Croatia. 2. Center of Excellence for Advanced Materials and Sensing Devices, Rudjer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia. 3. NASA Goddard Space Flight Center, Greenbelt, 20771 Maryland, United States. 4. Department of Physics & Astronomy, The Johns Hopkins University, 366 Bloomberg Center, 3400 N. Charles Street, Baltimore, 21218 Maryland, United States. 5. Department of Chemistry, University of Helsinki, P.O. Box 55, A. I. Virtasen aukio 1, FI-00014 Helsinki, Finland.
Abstract
X-ray astronomy lacks high resolution spectra of interstellar dust analogues and molecules, severely hampering interstellar medium studies based on upcoming X-ray missions. Various theoretical approaches may be used to address this problem, but they must first be shown to reproduce reliable spectra compared to the experiment. In this work, we calculate the sulfur K edge X-ray absorption spectra of H2S, SO2, and OCS, whose spectra are already known from X-ray experiments and predict the X-ray spectrum of CS, which as far as we are aware has not been measured, thereby hampering its detection by X-ray telescopes. We chose these four molecules as the astrochemistry of sulfur is an unsolved problem and as the four molecules are already known to exist in space. We consider three types of methods for modeling the X-ray spectra: more accurate calculations with the algebraic-diagrammatic construction (ADC) and the CC2, CCSD, and CC3 coupled cluster (CC) approaches as well as more affordable ones with transition potential density functional theory (TP-DFT). A comparison of our computational results to previously reported experimental spectra shows that the core-valence separation (CVS) approaches CVS-ADC(2)-x and CVS-CC3 generally yield a good qualitative level of agreement with the experiment, suggesting that they can be used for interpreting measured spectra, while the TP-DFT method is not reliable for these molecules. However, quantitative agreement with the experiment is still outside the reach of the computational methods studied in this work.
X-ray astronomy lacks high resolution spectra of interstellar dust analogues and molecules, severely hampering interstellar medium studies based on upcoming X-ray missions. Various theoretical approaches may be used to address this problem, but they must first be shown to reproduce reliable spectra compared to the experiment. In this work, we calculate the sulfur K edge X-ray absorption spectra of H2S, SO2, and OCS, whose spectra are already known from X-ray experiments and predict the X-ray spectrum of CS, which as far as we are aware has not been measured, thereby hampering its detection by X-ray telescopes. We chose these four molecules as the astrochemistry of sulfur is an unsolved problem and as the four molecules are already known to exist in space. We consider three types of methods for modeling the X-ray spectra: more accurate calculations with the algebraic-diagrammatic construction (ADC) and the CC2, CCSD, and CC3 coupled cluster (CC) approaches as well as more affordable ones with transition potential density functional theory (TP-DFT). A comparison of our computational results to previously reported experimental spectra shows that the core-valence separation (CVS) approaches CVS-ADC(2)-x and CVS-CC3 generally yield a good qualitative level of agreement with the experiment, suggesting that they can be used for interpreting measured spectra, while the TP-DFT method is not reliable for these molecules. However, quantitative agreement with the experiment is still outside the reach of the computational methods studied in this work.
X-ray
absorption experiments have long been used to identify chemical
species in materials science, even in situations where the absorption
features belong to the same range of energies.[1] As a result, X-ray studies are quite developed for complex materials
of interest in chemistry, physics, and biology.X-ray studies
are useful also in extraterrestrial contexts: observations
with X-ray telescopes such as Chandra and XMM-Newton have already
substantially improved our knowledge of various astrophysical phenomena.Although the detection of molecules in space is traditionally based
on the use of radio and infrared telescopes,[2,3] the
use of the X-ray range provides information on the molecule or grain
composition which is not available from the traditional long wavelength
regimes.However, the interpretation of the observed X-ray absorption
near
edge structure (XANES) spectra is critically dependent on the quality
of the reference spectra used for the identification, and the procedure
thus hinges on the availability of high-quality reference spectra
for the molecules under study in relevant environments.Reference
spectra for astrophysical observations typically come
from laboratory measurements of dust and molecules. However, laboratory
astrophysics for dust and molecules in space is less developed for
X-ray spectroscopy than for other wavelengths: only some measurements
of dust materials have been performed with modern synchrotron sources.[4−9] In addition, significant contributions to the measured astrophysical
spectra may arise from radicals as well as charged species, which
tend to be challenging to study experimentally.As an alternative,
calculated spectra can also be used for identification:[10,11] computational studies are straightforward even for species whose
measurement is difficult; however, in order to use computed spectra,
one must first establish the accuracy of the computational model by
comparison to known spectra.To facilitate future observations
in X-rays and aid possible detection
of new species, in this work, we study X-ray absorption spectra at
the sulfur K edge of H2S, SO2, OCS, and CS.
We have chosen these four molecules for several reasons. The molecules
are small, which allows the use of sophisticated computational methods
to model their X-ray spectra. Experimental spectra have been reported
for H2S, SO2, and OCS, allowing us to study
the reliability of our computational models, while for CS, we make
a prediction, as to the best of our knowledge, the spectrum of CS
has not yet been measured. The four molecules are also already known
to exist in space. CS was the first molecule discovered in space.[12] Shortly thereafter, OCS was detected in the
Sgr B molecular cloud,[13] and interstellar
H2S was discovered along the line of sight of seven galactic
sources.[14] SO2 was detected
for the first time in observations along the line of sight of Orion
and Sgr B2.[15] The four molecules have been
later observed in many other astrophysical environments, as well,
including the Solar system, our Galaxy, and external galaxies.[2,3]We have also chosen these molecules because very little is
presently
known about the astrochemistry of sulfur. Sulfur is known to be depleted
from the gas phase in dense molecular clouds. It could exist in the
solid phase, but only small amounts of H2S, SO2, and OCS have been observed in dust grains.[16−18] Sulfur could
also hide in metal compounds, such as FeS.[19] Kama et al.[20] recently studied 16 young,
disk-hosting stars and found that (89 ± 8)% of sulfur in the
inner regions of disks is in the form FeS and other sulfide minerals.
Some sulfur does exist in the gas phase either in neutral atomic S
or cationic S+ forms and in small molecules.[2,3,21−25] There is also a possibility that undiscovered larger
sulfur molecules exist in the gas phase[26] or in dust grains.[27,28]Having laid out our goals
for this work, we would like to shortly
discuss the state-of-the-art X-ray spectrum calculations. Several
theoretical methods for calculating X-ray spectra are available in
the literature, such as many-body perturbation theory based on the
Bethe–Salpeter equation,[29,30] coupled cluster (CC)
theory,[31−36] restricted open-shell density functional theory (DFT),[37] orthogonality constrained DFT,[38] nonorthogonal configuration interaction calculations,[39] time-dependent DFT,[40,41] algebraic-diagrammatic construction (ADC),[42−46] and transition potential (TP) approximation[47] of DFT.[48,49] Each of these methods
produces good agreement with experiments for some systems, whereas
for other systems, the methods’ errors may be larger. Even
though the errors in, for example, CC calculations and the ADC can
be systematically reduced by decreasing the amount of truncations
involved in the model, this results in a significant increase of the
required computational effort, limiting the more accurate calculations
to few-atom molecules.Many of these methods are in any case
computationally demanding
and are thereby untractable for routine modeling of many molecules
found in space, such as the C60 and C70 fullerenes.[50] Cosmic dust grains also have astrophysical significance
and can be modeled either as nanoparticles or as crystals; in either
case, such calculations require explicit modeling of many atoms and
are thus computationally challenging. Once new telescopes are launched,
it is likely that several more large molecules in the gas phase or
dust form will also join the list of known molecules in space, requiring
computationally tractable approaches for large systems.In this
work, X-ray spectra are calculated with TP density functional
theory (TP-DFT) as well as with the ADC and CC methods. TP-DFT builds
on DFT, which is the main workhorse of present-day materials science
and quantum chemistry due to its good accuracy in calculating the
properties of systems of interest in various branches of science and
technology.[51,52] As TP-DFT is routinely applicable
to extended systems, it is considered to be suitable as a general-use
tool for computations of X-ray spectra for astrophysical molecules
and dust grains. In contrast, the ADC[42−46] and CC[31−33,35] schemes, which offer a systematical hierarchy of methods for approaching
the exact solution to the Schrödinger equation, are considerably
more expensive. However, CC and ADC often yield spectral intensities
and spectral shapes that are in better agreement with the experiment
than those from TP-DFT.Next, in Section , we will discuss the computational procedures
to obtain the spectra
of H2S, SO2, OCS, and CS with the TP-DFT, ADC,
and CC approaches, which are presented and compared with available
X-ray experiments in Section . The article ends with a discussion in Section and conclusions in Section .
Computational Methods
The molecular structures of H2S, SO2, OCS,
and CS were optimized at the ωB97M-V/aug-pcseg-2 level of theory[53−56] with a development version of the Q-Chem package,[57] version 5.2, employing default settings; the optimal geometries
are available in the Supporting Information. All experimental spectra used in this work were digitized from
the original publications by WebPlotDigitizer version 4.3[58] employing the “X step with interpolation”
algorithm.The ADC, TP-DFT, and CC calculations produce a stick
spectrum for
the transitions between different states; the stick spectra for the
ADC and CC calculations are reported in the Supporting Information. To model the available experimental spectra of
H2S, SO2, and OCS for life-time and experimental
resolution effects, the computed stick spectra with intensities I at energies ω are convoluted by a Gaussian functionwith a broadening factor of σ = 0.3
eV for H2S and SO2 and CS; these broadenings
were determined to yield good agreement with the measured spectra.
As we are not aware of an experimental spectrum for CS, we use the
same broadening factor σ = 0.3 eV also for this molecule, in
order to aid comparisons to future measurements. Spectra for a much
smaller Gaussian broadening of σ = 0.1 eV, as well as spectra
with Lorentzian broadening, are presented for all four molecules in
the Supporting Information. In this work,
broadened spectra are shown in combination with the stick spectra,
in which the intensities for degenerate transitions are shown summed
together.To ease visual comparison with experiment, the computed,
broadened
spectra are shifted so that the first maximum is at the same position
as in the experiment; the value of the used energy shift is given
in each figure caption. Because we are not aware of an experimental
spectrum for CS, the computed spectra for CS are shown relative to
the corresponding sulfur K edges.Because X-ray spectra are
traditionally reported in arbitrary units,
for simplicity, the experiment and computational predictions are mapped
to the same scale by normalizing the maximum intensity of the first
peak to unity in both the experimental spectrum and the broadened
theoretical spectra.
ADC Method
The
ADC approach to electronic
excitations is based on the perturbation expansion of the polarization
propagator.[42,45] ADC methods are perturbation
schemes that are in principle improvable whenever the perturbation
series converges; the ADC(n) scheme corresponds to
the n-th order of perturbation theory. The ADC equations
are derived either using the many-body Green’s functions theory[42] or in an intermediate-state representation.[59] The ADC calculations were carried out with the
ADC-connect (ADCC) program, version 0.15.1,[60] in combination with PySCF, version 1.7.1.[61] Scalar relativistic effects were described with the exact two-component
(X2C) method.[62] A point nuclear model was
used in the calculations, as differences to the Gaussian nuclear model
were found to be negligible for the molecules studied herein. Testing
and comparing a number of ADC approximations led us to adopt the ADC(2)-x
approach, which is known to produce X-ray spectra in good agreement
with experiments.[44,46]The core–valence
separation (CVS) approximation is employed, as usual, in order to
make the calculations tractable in the X-ray regime. The CVS approximation
neglects the interaction between core and valence excitations, which
are typically small due to the large separation in energy between
the core and valence orbitals. The accuracy of the CVS approximation
was also investigated, as a recent study showed that errors of the
CVS approximation in the ADC methods for various basis sets range
from −0.4 to +0.7 eV for elements in the second and third periods.[63] However, following the methodology of ref (63), we found the CVS error
around the sulfur K edge to be negligible (∼0.01 eV) for the
higher-level, fully decontracted basis sets used in this work, justifying
the use of the CVS approximation.A detailed basis set convergence
study was performed for the CVS-ADC(2)-x
spectra. Decontraction and augmentation of the basis set were found
to be important, and the decontracted augmented quadruple-ζ
aug-pc-3 basis set[53−55] (denoted: un-aug-pc-3) was found to yield sufficiently
converged spectra; similarly, converged results were also obtained
with the decontracted augmented quadruple-ζ aug-cc-pV(Q+d)Z
basis set[64−66] (un-aug-cc-pV(Q+d)Z; see Supporting Information).The convergence of the CVS-ADC(2)-x spectra
with respect to the
number of calculated states was also studied. We chose to include
10 excited states for the calculations on H2S and CS and
20 excited states for the calculations on SO2 and OCS.Additional CVS-ADC(2)-x calculations were carried out for H2S and CS using doubly and triply augmented basis sets[67] (un-daug-pc-3 and un-taug-pc-3), in order to
assess the importance of Rydberg transitions on the spectrum. Although
it is traditionally difficult to use multiply augmented basis sets
in molecular calculations due to issues with numerical instabilities
caused by the resulting overcomplete basis set,[68] this issue has been recently resolved via a procedure based
on pivoted Cholesky decomposition[68,69] that has been
implemented in PySCF. We found that the importance of Rydberg states
on the X-ray spectra of the studied molecules is small; the spectra
for the un-daug-pc-3 and un-taug-pc-3 calculations are presented in
the Supporting Information.Comparison
of the stick spectra in the un-aug-pc-3 and its multiply
augmented counterparts reveals that multiple augmentation has negligible
effect on the energies and intensities of the first 6 transitions
in both H2S and CS. Notable differences in the spectra
only arise later on, where the spectrum is characterized with a large
number of tightly spaced transitions with weak intensities, especially
in the calculations with multiply augmented sets. This region corresponds
to transitions into the continuum, where calculations in Gaussian
basis sets are not expected to be reliable. This conclusion is also
supported by the analogous CC calculations on all four molecules;
see Section .
TP Density Functional Theory
X-ray
absorption spectra were also calculated using TP-DFT with the ERKALE
software package (git snapshot 6ed6aa1).[70] TP-DFT relies on the choice of density functional approximation,
which describes the quantum mechanical interaction of the electrons.
Hundreds of density functional approximations have been published
in the literature,[71] but the reliability
of the resulting computational predictions is system dependent. The
role of the exchange–correlation functional in TP-DFT calculations
of X-ray spectra has been studied previously for various chemical
species.[72,73] We assessed several functionals and basis
sets in calculations of K edges of H2S, SO2,
and OCS to determine the optimal approach. The entire hierarchical
family of the polarization consistent basis sets of Jensen[53−55] was benchmarked for the accuracy of the position of the first peak
and the overall shape of the spectrum with several exchange–correlation
functionals. It was again found that fully decontracting the basis
set on the excited sulfur atom led to the fastest convergence and
that the decontracted augmented triple-ζ aug-pc-2 basis yielded
sufficiently converged results (peak position converged to ∼0.1
eV); however, un-aug-pc-3 is used for a consistent comparison to the
CVS-ADC and CVS-CC results. The double-basis set procedure in which
a large set of Rydberg primitives is placed on the excited atom was
also used in the TP-DFT calculations to improve the description of
unoccupied continuum states.[74,75] We selected the ωB97M-V
range-separated functional[56] for the spectra
shown in this work, as we found this functional to reproduce the best
agreement with experiment. The ERKALE calculations employed a (99,590)
integration grid for the local exchange–correlation contributions
and a (50,194) grid for nonlocal correlation contributions.The absorption spectra are obtained from the TP approximation,[47] which produces estimates for all transitions
from a single calculation. The main drawback of TP is that it does
not produce a reliable absolute energy scale, as it does not fully
model the relaxation of the core hole. However, an absolute energy
scale can be established with an explicit calculation of the first
core-excited state with a ΔSCF [Δ self-consistent field]
procedure, in which the 1s electron is moved onto the lowest unoccupied
orbital; ΔSCF calculations are well-known to afford rather accurate
estimates for excitation energies. Next, the computed TP spectrum
is shifted so that the first transition occurs at the energy obtained
from the ΔSCF calculation.[76] Finally,
the calculated stick spectra are again broadened with Gaussian functions,
as discussed above in Section .As an element of the third period, the 1s orbital
of sulfur experiences
a considerable relativistic effect. Although this effect could be
captured, in principle, with, for example, the X2C method used in
the CVS-ADC calculations, we are not aware of any programs that support
TP-DFT calculations with this approach. Instead, previous studies
of X-ray absorption spectra of sulfur molecules within TP-DFT[77−79] applied a relativistic correction of +7.4 eV obtained by Risberg
and co-workers.[78] Repeating the ωB97M-V/un-aug-pc-3
ground-state calculations within PySCF, both with and without the
X2C correction, we find that the scalar relativistic correction to
the sulfur 1s orbital energy is 7.3 eV for all molecules, as shown
by Table . Analogous
to the previous works mentioned above, relativistic effects were modeled
by shifting the nonrelativistic spectrum from ERKALE by +7.3 eV.
Table 1
Relativistic Shifts in the Ground
State Sulfur 1s Energy Calculated for the ωB97M-V Functional
and the Decontracted aug-pc-3 Basis
molecule
correction (eV)
H2S
7.275
SO2
7.275
OCS
7.272
CS
7.272
CC Method
Similar to the ADC scheme,
the CC method is a systematically improvable approach for solving
the Schrödinger equation. Methods based on CC theory are becoming
standard tools in applications of electronic structure theory for
problems in chemistry and physics.[80,81] Recent works
using the CC method have the reproduced X-ray absorption spectra in
good agreement with experiments.[31−35]We use the eT package, version 1.0.7,
to compute X-ray spectra.[34,82] The equation-of-motion
method with the CVS technique is used with three coupled-cluster approximations:
CC2 (CC singles and perturbative doubles),[83] CCSD (CC singles and doubles),[84] and
CC3 (CC singles and doubles and perturbative triples).[34,85] CC2 is an approximation to CCSD, while CC3 is an approximation to
CCSDT (CC singles, doubles, and triples); the accuracy of the methods
can thereby be formally classified as CC2 (least accurate) < CCSD
< CC3 (most accurate). While the CC methods become more accurate
in increasing rank, with systems with n electrons
being described exactly with CC theory that includes up to n-fold substitutions, the computational cost also undergoes
a steep increase at every step of the level.We studied the
basis set convergence of the CVS-CC2, CVS-CCSD,
and CVS-CC3 spectra with the un-aug-pc-n basis sets
(n = 0, 1, 2, and 3); the values of the corresponding
K edges are given in the Supporting Information. The difference between the un-aug-pc-2 and un-aug-pc-3 K edges
is of the order of 0.2 eV for all molecules, suggesting that the un-aug-pc-3
spectrum is sufficiently converged. Spectra for the un-aug-pc-3 basis
are therefore used in this work. The CC3 calculations for SO2 failed to converge due to degenerate eigenstates. Therefore, for
SO2, we only show spectra for the CC2 and CCSD methods,
while for H2S, OCS, CS, and also CC3 data are included.The convergence of the CC spectra with respect to the number of
excited states was examined. Five excited states were sufficient for
a converged spectrum for SO2; six states were necessary
for CS and H2S, while seven excited states were used for
OCS. The CC stick spectra are broadened with the approach given in Section .Because
relativistic corrections are not included in eT at the
moment, we employ a semiempirical shift obtained at the X2C
level[62] for Hartree–Fock using the
Psi4 program,[86] version 1.3.2. The resulting
orbital energy shifts for the sulfur 1s are shown in Table . Based on these data, the CC
excitation energies are shifted by + 7.9 eV to account for relativistic
effects.
Table 2
Relativistic Shifts in the Ground
State Sulfur 1s Energy Calculated at the Hartree–Fock Level
and Using the Decontracted aug-pc-3 Basis
molecule
correction (eV)
H2S
7.915
SO2
7.917
OCS
7.911
CS
7.912
eT employs a pivoted Cholesky decomposition of the atomic-orbital
basis analogously to refs (68) and (69), allowing the use of overcomplete basis sets. As the basis set convergence
of the CC methods is known to be similar, the importance of further
augmentation of the basis, that is, the effect of Rydberg states was
studied with the CVS-CC2 method. In agreement with the CVS-ADC calculations
described in Section , multiple augmentation was found to have negligible effects
on the CVS-CC spectra with the chosen number of excited states. The
CVS-CC2/un-aug-pc-3 and CVS-CC2/un-daug-pc-3 stick spectra are given
in the Supporting Information.
Results
H2S
The X-ray absorption
spectrum of H2S has been measured in two works. Bodeur
and Esteva[88] found several peaks of decreasing
intensity with increasing photon energy. The near-edge region was
measured with an improved energy resolution by Reynaud et al.,[87] with an overall shift of the spectrum of 0.4
eV in comparison to the previous measurement of ref (88). The experimental spectrum
by Reynaud et al.[87] has two major peaks
around 2472.7 and 2475.7 eV.The CVS-ADC(2)-x spectrum, which
has been translated to match experiment as described in Section , is shown in Figure a. The CVS-ADC(2)-x spectrum
agrees well with experiment. The first two CVS-ADC(2)-x transitions
are positioned under the broad first experimental peak. Similarly,
the broad second peak covers several transitions. After taking into
account the translation, the position of the maximum of the second
peak in the CVS-ADC(2)-x spectrum differs from the experimental one
by 0.5 eV. Although the first peak in the CVS-ADC(2)-x spectrum also
has a shoulder that is not seen in the experimental spectrum of Reynaud
et al.,[87] the difference in the spectral
form can be tentatively explained by a slight overestimation of the
second transition in the CVS-ADC(2)-x calculation: if the real transition
is at a lower energy, the shoulder disappears. The shoulder also disappears
from the simulated spectrum if a larger Gaussian broadening is used
(shown in the Supporting Information).
The differences between the positions of the CVS-ADC(2)-x and the
measured peaks are 1.3 and 0.9 eV, respectively, for the experiment
of Reynaud et al.,[87] and −0.9 and
−1.5 eV for the experiment of Bodeur and Esteva;[88] see Table for a full set of values. A tentative interpretation
of the differences is that the CVS-ADC(2)-x method exhibits an error
in the order of 1 eV around the sulfur K edge that overestimates all
excitation energies, while the relative energies of the excitations
are predicted more accurately, within an error of 0.5 eV. The CVS-ADC(2)-x
data for all four molecules are given in the Supporting Information.
Figure 1
Comparison of computed (blue) and experimental (magenta)
spectra
of H2S with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2 (c),
CVS-CCSD (d), and CVS-CC3 (e) methods. Computed spectra are translated
by the amount shown in the captions to align the main peak to the
experiment. Vertical lines represent the calculated spectra, whereas
the curves are the theoretical spectra broadened for lifetime and
detector resolution effects to mimic the shape of the experimental
spectrum closely as possible. The experimental spectrum is adapted
with permission from Reynaud et al.[87] (copyright
1996 published by Elsevier B.V.).
Table 3
Comparison of the Computed and Experimental
Results in eV for the H2S Moleculea
experiment
CVS-ADC(2)-x
CVS-CC2
CVS-CCSD
CVS-CC3
main edge (first peak)
2474.0
2475.2
2476.7
2474.4
Reynaud
et al.[87]
2472.7
1.3
2.5
4.0
1.7
Bodeur and Esteva[88]
2473.1
0.9
2.1
3.6
1.3
second
peak
2474.8
2475.8
2477.5
2476.7
Reynaud et al.[87]
2475.7
–0.9
0.1
1.8
1.0
Bodeur and Esteva[88]
2476.3
–1.5
–0.5
1.2
0.4
Differences from the experimental
values are shown in each column.
Comparison of computed (blue) and experimental (magenta)
spectra
of H2S with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2 (c),
CVS-CCSD (d), and CVS-CC3 (e) methods. Computed spectra are translated
by the amount shown in the captions to align the main peak to the
experiment. Vertical lines represent the calculated spectra, whereas
the curves are the theoretical spectra broadened for lifetime and
detector resolution effects to mimic the shape of the experimental
spectrum closely as possible. The experimental spectrum is adapted
with permission from Reynaud et al.[87] (copyright
1996 published by Elsevier B.V.).Differences from the experimental
values are shown in each column.The translated TP-DFT spectrum of H2S is shown in Figure b. We find that the
excitation energy of the first transition is overestimated by 0.5
eV for the experiment of Reynaud et al.[87] and by 0.1 eV for the experiment by Bodeur and Esteva.[88] The good agreement for the position of the first
peak arises from the use of the ΔSCF procedure, which is well-known
to reproduce rather accurate transition energies. However, excitations
with small intensities, present at energies above 2473.6 eV on Figure b, lead to a TP-DFT
spectrum that does not agree with experiment for H2S.Table and Figure –e show results
of CC2, CCSD, and CC3 methods, respectively, for the H2S molecule. CC2 predicts only two peaks, as the first and second
transitions are close in energy and the higher transitions are likewise
spaced too closely together. CCSD predicts a larger spacing between
the first and second transitions, splitting the first peak in two,
while the higher-energy transitions are still grouped too closely
together. At variance to CC2 and CCSD, in CC3, the first peak is generated
by just one transition. Moreover, the near degeneracy of the higher
excitations is also lifted. As a result, the CC3 method spectrum correctly
reproduces all three broad experimental peaks, although the position
of the second peak is still off by 0.5 eV. The positions of the first
peaks, that is, the sulfur K edges, from CVS-ADC(2)-x and CVS-CC3,
differ by 0.4 eV, being in good agreement, while the positions of
the second peaks differ by a larger amount, 1.9 eV. The CVS-CC2, CVS-CCSD,
and CVS-CC3 data for all four molecules are given in the Supporting Information.
SO2
The X-ray absorption
spectrum of SO2 has been measured by Bodeur and Esteva[88] and later by Reynaud et al.[87] with an improved resolution. Reynaud et al.[87] found the energy scale to be shifted by 0.6
eV from the previous experiment of Bodeur and Esteva[88] and the ratios of the peak intensities to change as well.
In addition, instead of measuring a peak with a shoulder as in Bodeur
and Esteva,[88] Reynaud et al.[87] found the second and third resonances to be
split by 0.8 eV.The CVS-ADC(2)-x spectrum of SO2 is shown in Figure a. The values of the CVS-ADC(2)-x excitation energies are presented
and compared to the experiments of Bodeur and Esteva[88] and Reynaud et al.[87] in Table . Despite the small
disagreements between the two experiments, the findings from the data
of Table suggest
that CVS-ADC(2)-x overestimates the transition energies. The relative
peak positions are reproduced to good accuracy, however. Visual inspection
of Figure a shows
the CVS-ADC(2)-x and experimental spectrum to be in good agreement,
while the TP-DFT spectrum (presented in Figure b) again shows considerable discrepancies
from experiment due to the presence of many excitations for energies
higher than 2477.4 eV. The positions of the second and third peaks
in the CVS-ADC(2)-x spectrum of Figure a differ by 0.3 and 0.4 eV from the corresponding experimental
peaks. The position of the fifth transition is off by 1 eV from the
fourth experimental peak at 2481 eV. The fourth peak appears to cover
several computed excitations.
Figure 2
Comparison of computed (blue) and experimental
(magenta) spectra
of SO2 with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2 (c),
and CVS-CCSD (d) methods. Computed spectra are translated by the amount
shown in the captions to align the main peak to the experiment. Vertical
lines represent the calculated spectra, whereas the curves are the
theoretical spectra broadened for lifetime and detector resolution
effects to mimic the shape of the experimental spectrum closely as
possible. The experimental spectrum is adapted with permission from
Reynaud et al.[87] (copyright 1996 published
by Elsevier B.V.).
Table 4
Comparison
of the Computed and Experimental
Results in eV for the SO2 Moleculea
experiment
CVS-ADC(2)-x
CVS-CC2
CVS-CCSD
main
edge (first peak)
2474.6
2475.8
2477.1
Reynaud et al.[87]
2473.2
1.4
2.6
3.9
Bodeur and Esteva[88]
2473.8
0.8
2.0
3.3
second
peak
2479.6
2480.5
2482.1
Reynaud et al.[87]
2477.9
1.7
2.6
4.2
Bodeur and Esteva[88]
2478.4
1.2
2.1
3.7
third peak
2480.7
2481.6
2483.1
Reynaud et al.[87]
2478.7
2.0
2.9
4.4
Bodeur and Esteva[88]
2478.9
1.8
2.7
4.2
Differences from the experimental
values are shown in each column.
Comparison of computed (blue) and experimental
(magenta) spectra
of SO2 with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2 (c),
and CVS-CCSD (d) methods. Computed spectra are translated by the amount
shown in the captions to align the main peak to the experiment. Vertical
lines represent the calculated spectra, whereas the curves are the
theoretical spectra broadened for lifetime and detector resolution
effects to mimic the shape of the experimental spectrum closely as
possible. The experimental spectrum is adapted with permission from
Reynaud et al.[87] (copyright 1996 published
by Elsevier B.V.).Differences from the experimental
values are shown in each column.Although the TP-DFT spectrum (shown in Figure b) does not agree with the experiment as
a whole, the position of the sulfur K edge from the ΔSCF calculation
is again in excellent agreement with the experimental value: the position
of the main peak is overestimated by 0.4 eV compared to the experiment
by Reynaud et al.[87] and underestimated
by 0.2 eV compared to the experiment by Reynaud et al.[87]The CVS-CC2 and CVS-CCSD spectra for SO2 are shown in Figure c,d, respectively.
Although the relative position and form of the broad second peak are
reproduced better by CVS-CC2 than CVS-CCSD, as seen in Figure c,d, both the CVS-CC2 and CVS-CCSD
spectra are close to the measured spectrum. The results for CVS-CC2
and CVS-CCSD are summarized in Table .
OCS
The X-ray
spectrum of OCS has
been measured by Perera and LaVilla[89] as
well as by Nenner et al.[90] Even though
the experiment by Perera and LaVilla[89] is
older than the one by Nenner et al.,[90] its
spectrum is at a higher resolution than the one of the newer experiment
of ref (90). Therefore,
we decided to analyze the calculations with respect to the experiment
by Perera and LaVilla.[89]The CVS-ADC(2)-x
spectrum for OCS is shown in Figure a. A visual inspection shows that even though the first
computed transition differ from the experimental value by 2.2 eV (as
presented in Table ), the form of the spectrum, as interpreted from the stick transitions,
agrees well with the experiment, since all three major peaks of the
experiment are visible in the calculation. The CVS-ADC(2)-x method
even reproduces the small measured peak labeled “H”
in ref (89). After
the alignment, the fourth computed and experimental peaks turn out
to be at the same position. The small peaks (labeled “H1”
and “H2”) are also close to each other. However, the
second transition in CVS-ADC(2)-x is 0.7 eV too close to the first
one, compared to experiment. The intensity of the second transition
is also much too high compared to experiment.
Figure 3
Comparison of computed
(blue) and experimental (magenta) spectra
of OCS with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2 (c), CVS-CCSD
(d), and CVS-CC3 (e) methods. Computed spectra are translated by the
amount shown in the captions to align the main peak to the experiment.
Vertical lines represent the calculated spectra, whereas the curves
are the theoretical spectra broadened for lifetime and detector resolution
effects to mimic the shape of the experimental spectrum closely as
possible. The experimental spectrum of OCS adapted with permission
from Perera and LaVilla[89] (copyright 1984
published by AIP). The letter H was used in the measured spectra by
Perera and LaVilla[89] to label the third
peak with a small intensity.
Table 5
Comparison of the Computed and Experimental
Results in eV for the OCS Moleculea
experiment
CVS-ADC(2)-x
CVS-CC2
CVS-CCSD
CVS-CC3
main edge (first peak)
2474.2
2475.5
2477.4
2475.0
Nenner
et al.[90]
2471.2
3.0
4.3
6.2
3.8
Perera and LaVilla[89]
2472.0
2.2
3.5
5.4
3.0
second
peak
2474.9
2476.2
2477.8
2476.2
Nenner et al.[90]
2472.7
2.2
3.5
5.1
3.5
Perera and LaVilla[89]
2473.4
1.5
2.8
4.4
2.8
third peak
2478.2
2478.5
2481.2
2478.3
Nenner et al.[90]
2475.2
3.0
3.3
6.0
3.1
Perera and LaVilla[89]
2475.9
2.3
2.6
5.3
2.4
peak “H”
2476.8
2477.4
2479.8
2477.3
Perera and LaVilla[89]
2474.6
2.2
2.8
5.2
2.7
Differences from the experimental
values are shown in each column.
Comparison of computed
(blue) and experimental (magenta) spectra
of OCS with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2 (c), CVS-CCSD
(d), and CVS-CC3 (e) methods. Computed spectra are translated by the
amount shown in the captions to align the main peak to the experiment.
Vertical lines represent the calculated spectra, whereas the curves
are the theoretical spectra broadened for lifetime and detector resolution
effects to mimic the shape of the experimental spectrum closely as
possible. The experimental spectrum of OCS adapted with permission
from Perera and LaVilla[89] (copyright 1984
published by AIP). The letter H was used in the measured spectra by
Perera and LaVilla[89] to label the third
peak with a small intensity.Differences from the experimental
values are shown in each column.The TP-DFT spectrum shown in Figure b once again does not agree with the experimental data
due to the presence of many excitations of small intensities. However,
four broad computed peaks are visible in Figure b, including the peak H.The agreement
of the peak positions of the CVS-ADC(2)-x calculations
and the two experiments is analyzed in detail in Table . Despite an error of a few
eV—larger than those observed above for H2S and
SO2 in Tables and 4, respectively—the relative
positions of the majority of CVS-ADC(2)-x peaks are rather accurate.
The exception is the second computed peak. Like the CVS-ADC(2)-x calculation,
the ΔSCF calculation on OCS also shows a larger discrepancy
for the sulfur K edge: the position of the main peak is overestimated
by 2.9 eV for the experiment by Nenner et al.[90] and by 2.1 eV for the experiment by Perera and LaVilla.[89]The CVS-CC2, CVS-CCSD, and CVS-CC3 spectra
are shown in Figure c–e, respectively.
All four experimental peaks are reproduced by all three CC methods:
the third experimental peak (labeled “H” in the experiment[89] and “H1” in the experimental spectrum
in Figure ) is also
visible on the computed spectra (labeled “H2”). Like
CVS-ADC(2)-x, CVS-CC2, and CVS-CCSD underestimate the energy of the
second excitation and overestimate its intensity compared to experiment,
CVS-CC3, in turn, also underestimates the energy of the second transition
and furthermore underestimates its intensity considerably. The intensity
of the third peak is underestimated by CVS-CC2 and CVS-CCSD and overestimated
by CVS-CC3. Its position relative to the sulfur K edge is underestimated
by all three CC methods. The intensity of the fourth peak is reproduced
by CVS-CC2 and CVS-CCSD, while it is underestimated by CVS-CC3. Its
position is reproduced by CVS-CCSD, while it is underestimated by
CVS-CC2 and CVS-CC3. A summary of the CVS-CC2, CVS-CCSD, and CVS-CC3
results is given in Table .
CS
As stated above, we are not aware
of the measured spectrum for CS. The spectra computed with the CVS-ADC(2)-x,
TP-DFT, CVS-CC2, CVS-CCSD, and CVS-CC3 methods are shown in Figure b,a,c–e, respectively.
The CVS-ADC and CVS-CC spectra again agree qualitatively; the results
are summarized in Table . Especially, the CVS-CC3 and CVS-ADC(2)-x spectra in Figure e,a are in excellent agreement.
The positions of the first and second peaks in the CVS-ADC(2)-x and
CVS-CC3 calculations differ by 0.3 and 0.4 eV, respectively. The position
of the third peak is the same in both methods. These differences can
be contrasted to a recent study by Myhre et al.[91] that compared CVS-CCSD, CVS-CC3, and CVS-ADC(2)-x spectra
for the nitrogen K edge in N2 to synchrotron experiments.
Myhre et al. found the position of the first peak to be 0.13 eV which
is too high in CVS-CC3, 0.91 eV which is too high in CVS-CCSD, and
1.65 eV which is too low in CVS-ADC(2)-x, that is, a difference of
1.78 eV between the CC3 and ADC(2)-x predictions. The excellent level
of agreement between our CVS-CC3 and CVS-ADC(2)-x calculations for
the sulfur K edge in CS suggests that the computed spectra are reliable.
Figure 4
Computed
spectra of CS with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2
(c), CVS-CCSD (d), and CVS-CC3 (e) methods. Computed spectra are shown
translated to the corresponding sulfur K edge. Vertical lines represent
the calculated spectra, whereas the curves are the theoretical spectra
broadened for lifetime and detector resolution effects to mimic the
possible shape of the experimental spectrum that is not available.
Table 6
Position of First Peak and Relative
Positions of Second and Third Peaks in eV from CVS-ADC(2)-x and CVS-CC
Calculations for the CS Molecule
CVS-ADC(2)-x
CVS-CC2
CVS-CCSD
CVS-CC3
main edge (first peak)
2472.3
2473.8
2475.6
2472.0
second peak, relative to edge
4.3
3.9
4.0
4.7
third peak, relative to edge
5.2
4.4
5.0
5.2
Computed
spectra of CS with the CVS-ADC(2)-x (a), TP-DFT (b), CVS-CC2
(c), CVS-CCSD (d), and CVS-CC3 (e) methods. Computed spectra are shown
translated to the corresponding sulfur K edge. Vertical lines represent
the calculated spectra, whereas the curves are the theoretical spectra
broadened for lifetime and detector resolution effects to mimic the
possible shape of the experimental spectrum that is not available.TP-DFT once again disagrees with
the CVS-ADC(2)-x and CVS-CC calculations,
producing several transitions above 2474 eV that do not appear in
the CVS-ADC(2)-x or CVS-CC spectra. Because the CVS-ADC and CVS-CC
spectra agreed well with the experiment for H2S, SO2, and OCS, this disagreement suggests that the TP-DFT model
is not suitable for accurate modeling of the sulfur K edge spectra
of CS.
Discussion
We calculated
sulfur K edge X-ray spectra of H2S, SO2, OCS,
and CS using the ADC method CVS-ADC(2)-x; the CVS-CC2,
CVS-CCSD, and CVS-CC3 CC methods; and the TP approximation of DFT
with the ωB97M-V range-separated functional. Augmented, uncontracted
quadruple-ζ basis sets were used in this work, as we found them
to afford sufficiently converged spectra at all the aforementioned
levels of theory.It was found that the ΔSCF method produces
excellent agreement
with experiment for H2S and SO2: the differences
were 0.5 eV or less. However, comparison to the experiment showed
that the TP-DFT method does not yield a reliable description for the
XANES spectra of the studied four molecules.In contrast, the
CVS-ADC(2)-x and CVS CC spectra were found to
be in qualitatively good agreement with experiments for H2S, SO2, and OCS. The shapes of the CVS-ADC(2)-x and CC
spectra were found to be overall correct, and even though the excitation
energies were found to be slightly overestimated, the relative energies
of the excitations were found to be reproduced more accurately. An
excellent agreement between the CVS-CC3 and CVS-ADC(2)-x spectra was
found for CS, for which we are not aware of a measured spectrum, suggesting
that our predictions are accurate. The predictions of CVS-ADC(2)-x,
CVS-CC2, and CVS-CCSD for the XANES spectrum of SO2 are
also in outstanding agreement.In contrast, there are noticeable
differences between the spectra
reproduced by CVS-CC3 and CVS-ADC(2)-x in the cases of H2S and OCS. For both of these molecules, neither method is sufficient
for a quantitative reproduction of the experimental XANES spectrum.
We expect that proceeding to a higher level of CC theory, such as
the CCSDT or CCSDTQ method, would allow in-detail reproduction of
the intensities and relative positions of the peaks seen in the experiment.
Similarly, CVS-ADC results will generally improve if higher levels
of ADC are employed.The agreement found in this work between
the positions of the peaks
from CVS-ADC(2)-x calculations and experiment for H2S,
SO2, and OCS at the sulfur K edge is less remarkable than
that reported for CVS-ADC studies at the carbon, oxygen, and nitrogen
K edges in several molecules.[44] The case
of the OCS molecule is plausibly explained by errors in the experiment,
while the disagreements in the order of 1 eV for the sulfur K edge
in H2S and SO2 are much smaller than the disagreements
in CVS-ADC calculations for sulfur reported so far to the best of
our knowledge. In the only work we are aware of, in which CVS-ADC(2)-x
calculations of the sulfur K edge have been presented, Wenzel et al.[44] found the ADC(2)-x/6-311++G** sulfur K edge
in bithiophene, (C4H3S)2, to be underestimated
by 5.1 eV compared to experiment. However, Wenzel et al.[44] did not include a relativistic correction: with
a typical relativistic correction for sulfur of (7–8) eV, their
sulfur K edge would be overestimated by (2–3) eV. To confirm
the validity of the use of a semiempirical relativistic correction,
we calculated a sulfur K edge of 2466.3 eV in H2S with
the nonrelativistic CVS-ADC(2)-x/un-aug-pc-3 method, which is 7.7
eV lower than the corresponding relativistic value of 2474.0 eV. This
difference is explained almost entirely by the typical relativistic
correction of (7–8) eV: indeed, as discussed in Section , the sulfur
1s shift in H2S at the HF/un-aug-pc-3 level of theory (upon
which the ADC method builds) is 7.9 eV; thus, the error of the semiempirical
approach compared to a full relativistic calculation within the X2C
method is just +0.2 eV for the H2S molecule.Because
the use of a relativistic shift thus appears to be justified,
our CVS-ADC(2)-x values for the sulfur K edge in H2S and
SO2 are in better agreement with the experiment than the
one for bithiophene computed in ref (44). The calculation of Wenzel et al.[44] was limited by a small contracted basis set
that is known to be ill-behaving;[92,93] the reason
for our improved results is likely the application of a large uncontracted
basis set, which enables the use of the CVS-ADC(2)-x method for accurate
modeling of sulfur K edge spectra.The experimental results
for H2S, SO2, and
OCS are rather old, and comparisons of the experiments with the spectra
calculated in this work shows that new measurements with the now possible
higher resolutions are necessary to resolve the discrepancies between
calculations and experiments. The differences between the absolute
energy scales of the experiments are large, suggesting there is room
for new experiments. The difference between the calculated and experimental
excitation energies was found to be especially large for OCS in all
the CVS-ADC(2)-x, CVS-CC, and the ΔSCF calculations, suggesting
that experiments should be revisited especially for this molecule.
Conclusions and Perspectives
The initial motivation
for this study was to generate sulfur molecule
spectra that would allow future X-ray telescopes to identify and measure
the amounts of sulfur molecules in astrophysical environments. However,
we find that it is too early for this goal: the agreement between
theoretical and experimental spectra, as well as between different
experiments, is not at the level required by the next generation of
X-ray telescopes. XRISM and Athena, set to launch in 2022 and 2031,
respectively, will have spectral resolutions of 5 and 2.5 eV, respectively.
Lynx, if selected for further development, would launch in 2036 and
have 0.5 eV resolution. More laboratory and computational studies
are thereby solely needed for the further development of X-ray astrochemistry.[94]We hope that future high-resolution X-ray
facilities and developments
in computing and measuring X-ray spectra will establish X-ray methods
as standard tools in detecting and identifying molecules and dust
materials in space. Such work requires large, easily accessible databases
of reference spectra. A database of core excitations for gas phase
molecules[95] already exists but is outdated
and is oriented more toward organic chemistry and related applications
than toward the demands of astrophysical applications. As updated,
high resolution spectral databases similar to the PAH IR spectral
database[96] should be prepared for the X-ray
regime in anticipation of significantly increased future demand.
Authors: Marta L Vidal; Xintian Feng; Evgeny Epifanovsky; Anna I Krylov; Sonia Coriani Journal: J Chem Theory Comput Date: 2019-05-01 Impact factor: 6.006
Authors: Rolf H Myhre; Thomas J A Wolf; Lan Cheng; Saikat Nandi; Sonia Coriani; Markus Gühr; Henrik Koch Journal: J Chem Phys Date: 2018-02-14 Impact factor: 3.488