Literature DB >> 33837304

Genetic manipulation and immortalized culture of ex vivo primary human germinal center B cells.

Rebecca Caeser1, Jie Gao1, Miriam Di Re1, Chun Gong1, Daniel J Hodson2.   

Abstract

Next-generation sequencing has transformed our knowledge of the genetics of lymphoid malignancies. However, limited experimental systems are available to model the functional effects of these genetic changes and their implications for therapy. The majority of mature B-cell malignancies arise from the germinal center (GC) stage of B-cell differentiation. Here we describe a detailed protocol for the purification and ex vivo expansion of primary, nonmalignant human GC B cells. We present methodology for the high-efficiency transduction of these cells to enable combinatorial expression of putative oncogenes. We also describe alternative approaches for CRISPR-Cas9-mediated deletion of putative tumor suppressors. Mimicking genetic changes commonly found in lymphoid malignancies leads to immortalized growth in vitro, while engraftment into immunodeficient mice generates genetically customized, synthetic models of human lymphoma. The protocol is simple and inexpensive and can be implemented in any laboratory with access to standard cell culture and animal facilities. It can be easily scaled up to enable high-throughput screening and thus provides a versatile platform for the functional interrogation of lymphoma genomic data.

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Mesh:

Year:  2021        PMID: 33837304     DOI: 10.1038/s41596-021-00506-4

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  37 in total

1.  Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing.

Authors:  Jens G Lohr; Petar Stojanov; Michael S Lawrence; Daniel Auclair; Bjoern Chapuy; Carrie Sougnez; Peter Cruz-Gordillo; Birgit Knoechel; Yan W Asmann; Susan L Slager; Anne J Novak; Ahmet Dogan; Stephen M Ansell; Brian K Link; Lihua Zou; Joshua Gould; Gordon Saksena; Nicolas Stransky; Claudia Rangel-Escareño; Juan Carlos Fernandez-Lopez; Alfredo Hidalgo-Miranda; Jorge Melendez-Zajgla; Enrique Hernández-Lemus; Angela Schwarz-Cruz y Celis; Ivan Imaz-Rosshandler; Akinyemi I Ojesina; Joonil Jung; Chandra S Pedamallu; Eric S Lander; Thomas M Habermann; James R Cerhan; Margaret A Shipp; Gad Getz; Todd R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-17       Impact factor: 11.205

Review 2.  BCL6: master regulator of the germinal center reaction and key oncogene in B cell lymphomagenesis.

Authors:  Katia Basso; Riccardo Dalla-Favera
Journal:  Adv Immunol       Date:  2010       Impact factor: 3.543

Review 3.  Germinal centres and B cell lymphomagenesis.

Authors:  Katia Basso; Riccardo Dalla-Favera
Journal:  Nat Rev Immunol       Date:  2015-03       Impact factor: 53.106

4.  Genetic heterogeneity of diffuse large B-cell lymphoma.

Authors:  Jenny Zhang; Vladimir Grubor; Cassandra L Love; Anjishnu Banerjee; Kristy L Richards; Piotr A Mieczkowski; Cherie Dunphy; William Choi; Wing Yan Au; Gopesh Srivastava; Patricia L Lugar; David A Rizzieri; Anand S Lagoo; Leon Bernal-Mizrachi; Karen P Mann; Christopher Flowers; Kikkeri Naresh; Andrew Evens; Leo I Gordon; Magdalena Czader; Javed I Gill; Eric D Hsi; Qingquan Liu; Alice Fan; Katherine Walsh; Dereje Jima; Lisa L Smith; Amy J Johnson; John C Byrd; Micah A Luftig; Ting Ni; Jun Zhu; Amy Chadburn; Shawn Levy; David Dunson; Sandeep S Dave
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-04       Impact factor: 11.205

5.  Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma.

Authors:  Anupama Reddy; Jenny Zhang; Nicholas S Davis; Andrea B Moffitt; Cassandra L Love; Alexander Waldrop; Sirpa Leppa; Annika Pasanen; Leo Meriranta; Marja-Liisa Karjalainen-Lindsberg; Peter Nørgaard; Mette Pedersen; Anne O Gang; Estrid Høgdall; Tayla B Heavican; Waseem Lone; Javeed Iqbal; Qiu Qin; Guojie Li; So Young Kim; Jane Healy; Kristy L Richards; Yuri Fedoriw; Leon Bernal-Mizrachi; Jean L Koff; Ashley D Staton; Christopher R Flowers; Ora Paltiel; Neta Goldschmidt; Maria Calaminici; Andrew Clear; John Gribben; Evelyn Nguyen; Magdalena B Czader; Sarah L Ondrejka; Angela Collie; Eric D Hsi; Eric Tse; Rex K H Au-Yeung; Yok-Lam Kwong; Gopesh Srivastava; William W L Choi; Andrew M Evens; Monika Pilichowska; Manju Sengar; Nishitha Reddy; Shaoying Li; Amy Chadburn; Leo I Gordon; Elaine S Jaffe; Shawn Levy; Rachel Rempel; Tiffany Tzeng; Lanie E Happ; Tushar Dave; Deepthi Rajagopalan; Jyotishka Datta; David B Dunson; Sandeep S Dave
Journal:  Cell       Date:  2017-10-05       Impact factor: 41.582

6.  Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes.

Authors:  Bjoern Chapuy; Chip Stewart; Andrew J Dunford; Jaegil Kim; Atanas Kamburov; Robert A Redd; Mike S Lawrence; Margaretha G M Roemer; Amy J Li; Marita Ziepert; Annette M Staiger; Jeremiah A Wala; Matthew D Ducar; Ignaty Leshchiner; Ester Rheinbay; Amaro Taylor-Weiner; Caroline A Coughlin; Julian M Hess; Chandra S Pedamallu; Dimitri Livitz; Daniel Rosebrock; Mara Rosenberg; Adam A Tracy; Heike Horn; Paul van Hummelen; Andrew L Feldman; Brian K Link; Anne J Novak; James R Cerhan; Thomas M Habermann; Reiner Siebert; Andreas Rosenwald; Aaron R Thorner; Matthew L Meyerson; Todd R Golub; Rameen Beroukhim; Gerald G Wulf; German Ott; Scott J Rodig; Stefano Monti; Donna S Neuberg; Markus Loeffler; Michael Pfreundschuh; Lorenz Trümper; Gad Getz; Margaret A Shipp
Journal:  Nat Med       Date:  2018-04-30       Impact factor: 53.440

7.  Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma.

Authors:  Roland Schmitz; George W Wright; Da Wei Huang; Calvin A Johnson; James D Phelan; James Q Wang; Sandrine Roulland; Monica Kasbekar; Ryan M Young; Arthur L Shaffer; Daniel J Hodson; Wenming Xiao; Xin Yu; Yandan Yang; Hong Zhao; Weihong Xu; Xuelu Liu; Bin Zhou; Wei Du; Wing C Chan; Elaine S Jaffe; Randy D Gascoyne; Joseph M Connors; Elias Campo; Armando Lopez-Guillermo; Andreas Rosenwald; German Ott; Jan Delabie; Lisa M Rimsza; Kevin Tay Kuang Wei; Andrew D Zelenetz; John P Leonard; Nancy L Bartlett; Bao Tran; Jyoti Shetty; Yongmei Zhao; Dan R Soppet; Stefania Pittaluga; Wyndham H Wilson; Louis M Staudt
Journal:  N Engl J Med       Date:  2018-04-12       Impact factor: 91.245

8.  Analysis of the coding genome of diffuse large B-cell lymphoma.

Authors:  Laura Pasqualucci; Vladimir Trifonov; Giulia Fabbri; Jing Ma; Davide Rossi; Annalisa Chiarenza; Victoria A Wells; Adina Grunn; Monica Messina; Oliver Elliot; Joseph Chan; Govind Bhagat; Amy Chadburn; Gianluca Gaidano; Charles G Mullighan; Raul Rabadan; Riccardo Dalla-Favera
Journal:  Nat Genet       Date:  2011-07-31       Impact factor: 38.330

9.  Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Authors:  Ryan D Morin; Maria Mendez-Lago; Andrew J Mungall; Rodrigo Goya; Karen L Mungall; Richard D Corbett; Nathalie A Johnson; Tesa M Severson; Readman Chiu; Matthew Field; Shaun Jackman; Martin Krzywinski; David W Scott; Diane L Trinh; Jessica Tamura-Wells; Sa Li; Marlo R Firme; Sanja Rogic; Malachi Griffith; Susanna Chan; Oleksandr Yakovenko; Irmtraud M Meyer; Eric Y Zhao; Duane Smailus; Michelle Moksa; Suganthi Chittaranjan; Lisa Rimsza; Angela Brooks-Wilson; John J Spinelli; Susana Ben-Neriah; Barbara Meissner; Bruce Woolcock; Merrill Boyle; Helen McDonald; Angela Tam; Yongjun Zhao; Allen Delaney; Thomas Zeng; Kane Tse; Yaron Butterfield; Inanç Birol; Rob Holt; Jacqueline Schein; Douglas E Horsman; Richard Moore; Steven J M Jones; Joseph M Connors; Martin Hirst; Randy D Gascoyne; Marco A Marra
Journal:  Nature       Date:  2011-07-27       Impact factor: 49.962

10.  Integrating genomic alterations in diffuse large B-cell lymphoma identifies new relevant pathways and potential therapeutic targets.

Authors:  K Karube; A Enjuanes; I Dlouhy; P Jares; D Martin-Garcia; F Nadeu; G R Ordóñez; J Rovira; G Clot; C Royo; A Navarro; B Gonzalez-Farre; A Vaghefi; G Castellano; C Rubio-Perez; D Tamborero; J Briones; A Salar; J M Sancho; S Mercadal; E Gonzalez-Barca; L Escoda; H Miyoshi; K Ohshima; K Miyawaki; K Kato; K Akashi; A Mozos; L Colomo; M Alcoceba; A Valera; A Carrió; D Costa; N Lopez-Bigas; R Schmitz; L M Staudt; I Salaverria; A López-Guillermo; E Campo
Journal:  Leukemia       Date:  2017-08-14       Impact factor: 11.528

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  2 in total

1.  SHMT2 inhibition disrupts the TCF3 transcriptional survival program in Burkitt lymphoma.

Authors:  Anne C Wilke; Carmen Doebele; Alena Zindel; Kwang Seok Lee; Sara A Rieke; Michele Ceribelli; Federico Comoglio; James D Phelan; James Q Wang; Yana Pikman; Dominique Jahn; Björn Häupl; Constanze Schneider; Sebastian Scheich; Frances A Tosto; Hanibal Bohnenberger; Philipp Stauder; Frank Schnütgen; Mikolaj Slabicki; Zana A Coulibaly; Sebastian Wolf; Kamil Bojarczuk; Björn Chapuy; Christian H Brandts; Philipp Stroebel; Caroline A Lewis; Michael Engelke; Xincheng Xu; Hahn Kim; Thanh Hung Dang; Roland Schmitz; Daniel J Hodson; Kimberly Stegmaier; Henning Urlaub; Hubert Serve; Clemens A Schmitt; Fernando Kreuz; Gero Knittel; Joshua D Rabinowitz; Hans Christian Reinhardt; Matthew G Vander Heiden; Craig Thomas; Louis M Staudt; Thorsten Zenz; Thomas Oellerich
Journal:  Blood       Date:  2022-01-27       Impact factor: 25.476

2.  PARP14 is a novel target in STAT6 mutant follicular lymphoma.

Authors:  Michael Mentz; William Keay; Verena Passerini; Oliver Weigert; Carolin Dorothea Strobl; Martina Antoniolli; Louisa Adolph; Michael Heide; Axel Lechner; Sarah Haebe; Elisa Osterode; Robert Kridel; Christoph Ziegenhain; Lucas Esteban Wange; Johannes Adrian Hildebrand; Tanaya Shree; Elisabeth Silkenstedt; Annette M Staiger; German Ott; Heike Horn; Monika Szczepanowski; Julia Richter; Ronald Levy; Andreas Rosenwald; Wolfgang Enard; Ursula Zimber-Strobl; Michael von Bergwelt-Baildon; Wolfgang Hiddemann; Wolfram Klapper; Marc Schmidt-Supprian; Martina Rudelius; Deepak Bararia
Journal:  Leukemia       Date:  2022-07-18       Impact factor: 12.883

  2 in total

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