Literature DB >> 33835234

Complete Genome Sequence of a Novel Bacteriophage RpY1 Infecting Ralstonia solanacearum Strains.

Seung Yeup Lee1, Hyo Jeong Kim1, Roniya Thapa Magar1, Kihyuck Choi1, Seon-Woo Lee2.   

Abstract

Ralstonia solanacearum species complex is deleterious plant pathogenic bacteria causing bacterial wilt in the members of solanaceous crops and the bacterial wilt is difficult to control. Bacteriophages-based biocontrol is an environmentally friendly and promising strategy to control bacterial plant diseases. In this study, we isolated 72 phages from the various crop cultivated soils in Korea using five different strains of R. solanacearum. Among 72 phages, phage RpY1 was selected for further study based on the specificity of the targeted host. This phage was identified as a member of Podoviridae with a head measuring 60-70 nm in length and short tail according to the morphology of transmission electron microscopy images. The genome size of phage RpY1 is 43,284 bp with G + C content of 61.4% and 53 open reading frames (ORFs), including 18 annotated ORFs and 35 hypothetical proteins. This phage genome showed no homology to the genome of known phages except for the DU_RP_II phage infecting R. solanacearum; however, the host range of phage RpY1 is much narrower than that of DU_RP_II.

Entities:  

Year:  2021        PMID: 33835234     DOI: 10.1007/s00284-021-02466-0

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  11 in total

1.  Bacteriophages of Erwinia amylovora.

Authors:  J J Gill; A M Svircev; R Smith; A J Castle
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

2.  Characterization of filamentous bacteriophage PE226 infecting Ralstonia solanacearum strains.

Authors:  S Murugaiyan; J Y Bae; J Wu; S D Lee; H Y Um; H K Choi; E Chung; J-H Lee; S-W Lee
Journal:  J Appl Microbiol       Date:  2010-11-04       Impact factor: 3.772

3.  Distribution of tetracycline resistance genes and transposons among phylloplane bacteria in Michigan apple orchards.

Authors:  E L Schnabel; A L Jones
Journal:  Appl Environ Microbiol       Date:  1999-11       Impact factor: 4.792

4.  [Lipoamide dehydrogenase, citrate synthase and beta-hydroxyacyl-CoA-dehydrogenase in skeletal muscle. VIII. The influence of temperature and rate of freezing of bovine muscle on the activity and subcellular distribution of the enzymes in the thawed tissue].

Authors:  R Hamm; P Gottesmann
Journal:  Z Lebensm Unters Forsch       Date:  1985-09

5.  Complete genome sequence of DU_RP_II, a novel Ralstonia solanacearum phage of the family Podoviridae.

Authors:  Tae-Ho Park
Journal:  Arch Virol       Date:  2017-09-30       Impact factor: 2.574

6.  Improved Efficacy of Newly Formulated Bacteriophages for Management of Bacterial Spot on Tomato.

Authors:  B Balogh; J B Jones; M T Momol; S M Olson; A Obradovic; P King; L E Jackson
Journal:  Plant Dis       Date:  2003-08       Impact factor: 4.438

7.  Biocontrol potential of a lytic bacteriophage PE204 against bacterial wilt of tomato.

Authors:  Ju Young Bae; Jing Wu; Hyoung Ju Lee; Eun Jeong Jo; Senthilkumar Murugaiyan; Eunsook Chung; Seon-Woo Lee
Journal:  J Microbiol Biotechnol       Date:  2012-12       Impact factor: 2.351

8.  New bacteriophages that infect the phytopathogen Ralstonia solanacearum.

Authors:  Takashi Yamada; Takeru Kawasaki; Shoko Nagata; Akiko Fujiwara; Shoji Usami; Makoto Fujie
Journal:  Microbiology (Reading)       Date:  2007-08       Impact factor: 2.777

9.  Genomic characterization of the filamentous integrative bacteriophages {phi}RSS1 and {phi}RSM1, which infect Ralstonia solanacearum.

Authors:  Takeru Kawasaki; Shoko Nagata; Akiko Fujiwara; Hideki Satsuma; Makoto Fujie; Shoji Usami; Takashi Yamada
Journal:  J Bacteriol       Date:  2007-06-08       Impact factor: 3.490

10.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

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  2 in total

1.  Biocontrol of bacterial wilt in tomato with a cocktail of lytic bacteriophages.

Authors:  Roniya Thapa Magar; Seung Yeup Lee; Hyo Jeong Kim; Seon-Woo Lee
Journal:  Appl Microbiol Biotechnol       Date:  2022-05-14       Impact factor: 4.813

2.  Genomic Analysis of the First European Bacteriophages with Depolymerase Activity and Biocontrol Efficacy against the Phytopathogen Ralstonia solanacearum.

Authors:  Elena G Biosca; José Francisco Català-Senent; Àngela Figàs-Segura; Edson Bertolini; María M López; Belén Álvarez
Journal:  Viruses       Date:  2021-12-17       Impact factor: 5.048

  2 in total

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