| Literature DB >> 33833781 |
Sufang Peng1, Hang Su1, Tianzhen Chen1, Xiaotong Li1, Jiang Du1, Haifeng Jiang1, Min Zhao1,2,3.
Abstract
OBJECTS: To explore the long-term influence of methamphetamine abuse on metabolomics character, with gas chromatography-mass spectrometry (GS-MS) technology, and the potential regulatory network using the bioinformatics method.Entities:
Keywords: bioinformatics; glutamate metabolic pathway; metabolomics; methamphetamine abuse; regulatory network
Year: 2021 PMID: 33833781 PMCID: PMC8021790 DOI: 10.3389/fgene.2021.653443
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Primers used in Q-PCR.
| GAPDH | F AGGGCTGCTTTTAACTCTGGT R CCCCACTTGATTTTGGAGGGA |
| DLG2 | F CCCAATGGGATGGCAGACTT R AGTATTCCCACCTCCCTCCC |
| NRG1 | F GCAACTTTGTTTCCCGGGTC R TTGGGGGCAAAAGTCACACT |
| PLA2G4E | F AATCAGTGCTCCCTTGAGCC R GCATTACCTGGATGGGGACC |
| STX8 | F CCCCTGGTTCTCCACATACG R TCTGTCTTCGGTCCCCTTCA |
| NEDD4L | F AGGGTTAGCTTCCTGTTGGC R TGGTACGGGGTTGAGAATGC |
| PRKG1 | F ACTTGGTGCACCTCTCAACA R AGTCATTGCCAAGGTCCCAG |
| PDE4D | F TCTTACAGCCCACGGGGATA R AGGCAGAATCAACCCATGCT |
| PDE4B | F GTGTCGTTCACCGTGAGAGT R CGGGGTGAAGAGAGGAGGTA |
| CD55 | F CATCTTTCCTTCGGGTTGGC R CACCATCAACACCCCTGGTT |
| EPHB2 | F AGTCTGGGGAGGGACTCATC R CTGTGTGGCCATGGAAGCTA |
| RAPGEF5 | F GGGCTTTCACTGCTACCCAT R GATTGGCTGCGCCATTTAGG |
| SERPINA5 | F GCTATGGCCCATCTGTATGCT R TTCCCCAAGGCACCTGTATG |
| PDE6C | F TTTTGGAGAGGCACCACCTG R AACTGTTTCAAACTGCCGCT |
Demographic characteristics of subjects.
| Age (years) | 34.02 ± 6.82 | 32.02 ± 8.57 | 1.13 | 0.260 |
| BMI (kg/m2) | 24.44 ± 3.64 | 23.54 ± 3.23 | 1.14 | 0.260 |
| Education (years) | 5.95 ± 3.55 | 6.97 ± 3.14 | 1.14 | 0.256 |
| Marital status | 16.537 | 0.000 | ||
| Married | 9 (23.1%) | 20 (52.6%) | ||
| Divorced/Separated | 15 (38.4%) | 1 (2.6%) | ||
| Unmarried | 15 (38.4%) | 17 (44.7%) | ||
| Employment | 8.271 | 0.004 | ||
| Unemployed | 18 (46.1%) | 6 (15.8%) | ||
| The age began to abuse (years) | 25.20 ± 7.52 | |||
| Withdrawal time (month) | 3.20 ± 1.32 | |||
| Duration of abuse (years) | 6.51 ± 3.26 | |||
| Average dosage (g) | 0.64 ± 0.35 | |||
| Everyday | 24 (60.0%) | |||
| 3–5 times/week | 12 (30.0%) | |||
| 1 time/week | 2 (5.0%) | |||
| 1–3 times/month | 2 (5.0%) |
Differentially expressed metabolites in pathways.
| Alcohols | Glycerin | Galactose metabolism, glyceride metabolism | 0.6 | 0.000 | 0.000 | 0.898 |
| Alcohols | Inositol | Galactose metabolism, inositol metabolism, inositol phosphate metabolism, phosphatidylinositol phosphate metabolism | 0.7 | 0.001 | 0.001 | 0.813 |
| Amino acids | 1-Methylhistidine | Histidine metabolism | 1.4 | 0.001 | 0.001 | –0.802 |
| Amino acids | L- Aspartic acid | Ammonia recovery, arginine and proline metabolism, aspartic acid metabolism, B-alanine metabolism, malate-aspartic acid shuttle, transcription/translation, urea cycle | 1.5 | 0.001 | 0.002 | –0.761 |
| Amino acids | Homocysteine | Betaine metabolism, catecholamine biosynthesis, glycine and serine metabolism, homocysteine degradation, methionine metabolism | 1.4 | 0.004 | 0.004 | –0.692 |
| Amino acids | L- Methionine | Betaine metabolism, glycine and serine metabolism, methionine metabolism, spermidine and spermine biosynthesis, transcription/translation | 0.9 | 0.005 | 0.009 | 0.658 |
| Amino acids | L- Glutamic acid | Amino sugar metabolism, ammonia recovery, glutamate metabolism, phenyl acetate metabolism, purine metabolism, pyrimidine metabolism, transcription/translation, urea cycle | 1.1 | 0.011 | 0.015 | –0.597 |
| Amino acids | Ornithine | Metabolism of arginine and proline, metabolism of glycine and serine, biosynthesis of spermine and spermine, urea cycle | 1.3 | 0.013 | 0.020 | –0.582 |
| Amino acids | L- Cysteine | Cysteine Metabolism, Glutathione Metabolism, Glycine and Serine Metabolism, Methionine Metabolism, Pantothenate and CoA Biosynthesis, Tauurine and Tauurine Metabolism, Transcription/Translation | 0.9 | 0.028 | 0.016 | 0.517 |
| Amino acids | L- Isoleucine | Degradation, transcription/translation of valine, leucine and isoleucine | 1.1 | 0.029 | 0.088 | –0.512 |
| Amino acids | L- Proline | Arginine and proline metabolism, transcription/translation | 1.2 | 0.032 | 0.068 | –0.502 |
| Carbohydrate | Sorbitol | Fructose and mannose degradation, galactose metabolism | 0.9 | 0.025 | 0.027 | 0.525 |
| Fatty acids | Linoleic acid | α-linolenic acid and linoleic acid metabolism | 0.8 | 0.007 | 0.008 | 0.643 |
| Nucleotides | Hypoxanthine | Purine metabolism | 1.4 | 0.000 | 0.000 | –1.046 |
| Nucleotides | Xanthine | Purine metabolism | 1.2 | 0.000 | 0.000 | –0.900 |
| Nucleotides | Guanosine hydrate | Purine metabolism | 0.7 | 0.005 | 0.006 | 0.658 |
| Organic acids | Glyceric acid | Glyceride metabolism, glycine and serine metabolism | 0.7 | 0.000 | 0.000 | 1.023 |
| Organic acids | Pyruvic acid | Alanine metabolism, amino glucose metabolism, ammonia recovery, tricarboxylic acid cycle, cysteine metabolism, gluconeogenesis, glucose-alanine cycle, glycine and serine metabolism, glycolysis, pyruvic aldehyde degradation, pyruvate metabolism, acetyl mitochondrial transfer, urea cycle | 0.6 | 0.000 | 0.000 | 0.872 |
| Organic acids | Vanillylmandelic_acid | Tyrosine metabolism | 0.8 | 0.002 | 0.002 | 0.744 |
| Organic acids | Hydroxypropionic_acid | Propionic acid metabolism | 0.9 | 0.033 | 0.027 | 0.497 |
| Organic acids | Fumaric acid | Arginine and proline metabolism, aspartic acid metabolism, citric acid cycle, mitochondrial electron transport chain, phenylalanine and tyrosine metabolism, tyrosine metabolism, urea cycle | 0.7 | 0.037 | 0.047 | 0.488 |
FIGURE 1Significant pathways (the pathways which p < 0.05, and Impactor factor > 0.02 were marked out).
FIGURE 2The regulatory network model for alanine, aspartic acid and glutamate metabolism pathway(enzyme, posttranslational modification, activate, inhibition, catalysis, reaction, and combine. Yellow oval, metabolites of glutamate pathway; Green parallelogram, regulatory enzymes; Purple diamond, intermediate proteins; Red square, candidate genes).
Expression of candidate genes.
| DLG2 | 0.250 ± 0.104 | 0.190 ± 0.083 | 2.804 | 0.006 | –2.348 | 0.022 | 0.638 |
| NRG1 | 0.220 ± 0.071 | 0.210 ± 0.066 | 1.207 | 0.231 | –1.002 | 0.320 | 0.146 |
| PLA2G4 | 0.050 ± 0.028 | 0.020 ± 0.024 | 4.260 | 0.000 | –3.672 | 0.000 | 1.150 |
| STX8 | – | – | – | – | – | – | – |
| NEDD4L | 0.140 ± 0.041 | 0.140 ± 0.053 | –0.532 | 0.596 | 0.528 | 0.599 | –0.101 |
| PDE4D | 0.140 ± 0.038 | 0.120 ± 0.050 | 2.007 | 0.048 | –1.665 | 0.100 | 0.450 |
| PDE4B | 0.170 ± 0.039 | 0.150 ± 0.040 | 2.191 | 0.032 | –1.722 | 0.090 | 0.506 |
| CD55 | 0.110 ± 0.032 | 0.100 ± 0.036 | 0.912 | 0.365 | –0.609 | 0.545 | 0.294 |
| EPHB2 | 0.280 ± 0.137 | 0.190 ± 0.065 | 3.731 | 0.000 | –3.324 | 0.001 | 0.839 |
| RAPGEF5 | – | – | – | – | – | – | – |
| SERPINA5 | 0.220 ± 0.076 | 0.190 ± 0.052 | 1.904 | 0.061 | –1.639 | 0.106 | 0.461 |
| PDE6C | – | – | – | – | – | – | – |
FIGURE 3Relative expression fold of candidate genes. *Means that these genes are significantly different expressed in two groups.
Expression of candidate enzymes.
| ASNS | 2.28 ± 1.65 | 2.21 ± 1.44 | 0.18 | 0.86 | 0.045 |
| AGT | 3.31 ± 1.23 | 3.52 ± 1.64 | –0.63 | 0.53 | –0.145 |
| GAD1 | 0.49 ± 0.13 | 0.50 ± 0.12 | –0.34 | 0.74 | –0.080 |
| GAD2 | 3.88 ± 0.92 | 3.71 ± 1.56 | 0.59 | 0.54 | 0.133 |