Literature DB >> 33833260

Digital image processing to detect subtle motion in stony coral.

Shuaifeng Li1, Liza M Roger2, Lokender Kumar3, Nastassja A Lewinski2, Judith Klein-Seetharaman4, Alex Gagnon5, Hollie M Putnam6, Jinkyu Yang7.   

Abstract

Coral reef ecosystems support significant biological activities and harbor huge diversity, but they are facing a severe crisis driven by anthropogenic activities and climate change. An important behavioral trait of the coral holobiont is coral motion, which may play an essential role in feeding, competition, reproduction, and thus survival and fitness. Therefore, characterizing coral behavior through motion analysis will aid our understanding of basic biological and physical coral functions. However, tissue motion in the stony scleractinian corals that contribute most to coral reef construction are subtle and may be imperceptible to both the human eye and commonly used imaging techniques. Here we propose and apply a systematic approach to quantify and visualize subtle coral motion across a series of light and dark cycles in the scleractinian coral Montipora capricornis. We use digital image correlation and optical flow techniques to quantify and characterize minute coral motions under different light conditions. In addition, as a visualization tool, motion magnification algorithm magnifies coral motions in different frequencies, which explicitly displays the distinctive dynamic modes of coral movement. Specifically, our assessment of displacement, strain, optical flow, and mode shape quantify coral motion under different light conditions, and they all show that M. capricornis exhibits more active motions at night compared to day. Our approach provides an unprecedented insight into micro-scale coral movement and behavior through macro-scale digital imaging, thus offering a useful empirical toolset for the coral research community.

Entities:  

Year:  2021        PMID: 33833260     DOI: 10.1038/s41598-021-85800-7

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  25 in total

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Authors:  D R Bellwood; T P Hughes; C Folke; M Nyström
Journal:  Nature       Date:  2004-06-24       Impact factor: 49.962

Review 2.  Defining the Core Microbiome in Corals' Microbial Soup.

Authors:  Alejandra Hernandez-Agreda; Ruth D Gates; Tracy D Ainsworth
Journal:  Trends Microbiol       Date:  2016-12-03       Impact factor: 17.079

3.  Global warming and recurrent mass bleaching of corals.

Authors:  Terry P Hughes; James T Kerry; Mariana Álvarez-Noriega; Jorge G Álvarez-Romero; Kristen D Anderson; Andrew H Baird; Russell C Babcock; Maria Beger; David R Bellwood; Ray Berkelmans; Tom C Bridge; Ian R Butler; Maria Byrne; Neal E Cantin; Steeve Comeau; Sean R Connolly; Graeme S Cumming; Steven J Dalton; Guillermo Diaz-Pulido; C Mark Eakin; Will F Figueira; James P Gilmour; Hugo B Harrison; Scott F Heron; Andrew S Hoey; Jean-Paul A Hobbs; Mia O Hoogenboom; Emma V Kennedy; Chao-Yang Kuo; Janice M Lough; Ryan J Lowe; Gang Liu; Malcolm T McCulloch; Hamish A Malcolm; Michael J McWilliam; John M Pandolfi; Rachel J Pears; Morgan S Pratchett; Verena Schoepf; Tristan Simpson; William J Skirving; Brigitte Sommer; Gergely Torda; David R Wachenfeld; Bette L Willis; Shaun K Wilson
Journal:  Nature       Date:  2017-03-15       Impact factor: 49.962

4.  Ocean acidification affects coral growth by reducing skeletal density.

Authors:  Nathaniel R Mollica; Weifu Guo; Anne L Cohen; Kuo-Fang Huang; Gavin L Foster; Hannah K Donald; Andrew R Solow
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-29       Impact factor: 11.205

5.  Global warming transforms coral reef assemblages.

Authors:  Terry P Hughes; James T Kerry; Andrew H Baird; Sean R Connolly; Andreas Dietzel; C Mark Eakin; Scott F Heron; Andrew S Hoey; Mia O Hoogenboom; Gang Liu; Michael J McWilliam; Rachel J Pears; Morgan S Pratchett; William J Skirving; Jessica S Stella; Gergely Torda
Journal:  Nature       Date:  2018-04-18       Impact factor: 49.962

6.  Red light represses the photophysiology of the scleractinian coral Stylophora pistillata.

Authors:  Tim Wijgerde; Anne van Melis; Catarina I F Silva; Miguel C Leal; Luc Vogels; Claudia Mutter; Ronald Osinga
Journal:  PLoS One       Date:  2014-03-21       Impact factor: 3.240

7.  Coral calcification under daily oxygen saturation and pH dynamics reveals the important role of oxygen.

Authors:  Tim Wijgerde; Catarina I F Silva; Vera Scherders; Judith van Bleijswijk; Ronald Osinga
Journal:  Biol Open       Date:  2014-05-23       Impact factor: 2.422

8.  Long-term imaging of the photosensitive, reef-building coral Acropora muricata using light-sheet illumination.

Authors:  Pierre Philippe Laissue; Loretta Roberson; Yan Gu; Chen Qian; David J Smith
Journal:  Sci Rep       Date:  2020-06-25       Impact factor: 4.379

9.  Turning up the heat: increasing temperature and coral bleaching at the high latitude coral reefs of the Houtman Abrolhos Islands.

Authors:  David A Abdo; Lynda M Bellchambers; Scott N Evans
Journal:  PLoS One       Date:  2012-08-29       Impact factor: 3.240

10.  A rapid spread of the stony coral tissue loss disease outbreak in the Mexican Caribbean.

Authors:  Lorenzo Alvarez-Filip; Nuria Estrada-Saldívar; Esmeralda Pérez-Cervantes; Ana Molina-Hernández; Francisco J González-Barrios
Journal:  PeerJ       Date:  2019-11-26       Impact factor: 2.984

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