Literature DB >> 33833098

Mechanism and dynamics of fatty acid photodecarboxylase.

D Sorigué1, K Hadjidemetriou2, S Blangy1, G Gotthard3, A Bonvalet4, N Coquelle5, P Samire1,6, A Aleksandrov4, L Antonucci4, A Benachir4, S Boutet7, M Byrdin2, M Cammarata8, S Carbajo7, S Cuiné1, R B Doak9, L Foucar9, A Gorel9, M Grünbein9, E Hartmann9, R Hienerwadel1, M Hilpert9, M Kloos10, T J Lane7, B Légeret1, P Legrand11, Y Li-Beisson1, S L Y Moulin1, D Nurizzo3, G Peltier1, G Schirò2, R L Shoeman9, M Sliwa12, X Solinas4, B Zhuang4,6, T R M Barends9, J-P Colletier2, M Joffre4, A Royant2,3, C Berthomieu13, M Weik14, T Domratcheva10,15, K Brettel6, M H Vos16, I Schlichting10, P Arnoux13, P Müller17, F Beisson13.   

Abstract

Fatty acid photodecarboxylase (FAP) is a photoenzyme with potential green chemistry applications. By combining static, time-resolved, and cryotrapping spectroscopy and crystallography as well as computation, we characterized Chlorella variabilis FAP reaction intermediates on time scales from subpicoseconds to milliseconds. High-resolution crystal structures from synchrotron and free electron laser x-ray sources highlighted an unusual bent shape of the oxidized flavin chromophore. We demonstrate that decarboxylation occurs directly upon reduction of the excited flavin by the fatty acid substrate. Along with flavin reoxidation by the alkyl radical intermediate, a major fraction of the cleaved carbon dioxide unexpectedly transformed in 100 nanoseconds, most likely into bicarbonate. This reaction is orders of magnitude faster than in solution. Two strictly conserved residues, R451 and C432, are essential for substrate stabilization and functional charge transfer.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Entities:  

Year:  2021        PMID: 33833098     DOI: 10.1126/science.abd5687

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  11 in total

1.  Redox-controlled reorganization and flavin strain within the ribonucleotide reductase R2b-NrdI complex monitored by serial femtosecond crystallography.

Authors:  Juliane John; Oskar Aurelius; Vivek Srinivas; Patricia Saura; In-Sik Kim; Asmit Bhowmick; Philipp S Simon; Medhanjali Dasgupta; Cindy Pham; Sheraz Gul; Kyle D Sutherlin; Pierre Aller; Agata Butryn; Allen M Orville; Mun Hon Cheah; Shigeki Owada; Kensuke Tono; Franklin D Fuller; Alexander Batyuk; Aaron S Brewster; Nicholas K Sauter; Vittal K Yachandra; Junko Yano; Ville R I Kaila; Jan Kern; Hugo Lebrette; Martin Högbom
Journal:  Elife       Date:  2022-09-09       Impact factor: 8.713

2.  Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer.

Authors:  Beverly Fu; Azadeh Nazemi; Benjamin J Levin; Zhongyue Yang; Heather J Kulik; Emily P Balskus
Journal:  J Am Chem Soc       Date:  2022-06-15       Impact factor: 16.383

3.  Pushing the limits of flash photolysis to unravel the secrets of biological electron and proton transfer.

Authors:  Paul Mathis; Evelyne Sage; Martin Byrdin
Journal:  Photochem Photobiol Sci       Date:  2022-01-26       Impact factor: 4.328

Review 4.  Mapping Enzyme Landscapes by Time-Resolved Crystallography with Synchrotron and X-Ray Free Electron Laser Light.

Authors:  Mark A Wilson
Journal:  Annu Rev Biophys       Date:  2021-12-21       Impact factor: 19.763

5.  Ultrafast photooxidation of protein-bound anionic flavin radicals.

Authors:  Bo Zhuang; Rivo Ramodiharilafy; Ursula Liebl; Alexey Aleksandrov; Marten H Vos
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-22       Impact factor: 12.779

6.  Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography.

Authors:  Suraj Pandey; George Calvey; Andrea M Katz; Tek Narsingh Malla; Faisal H M Koua; Jose M Martin-Garcia; Ishwor Poudyal; Jay-How Yang; Mohammad Vakili; Oleksandr Yefanov; Kara A Zielinski; Sasa Bajt; Salah Awel; Katarina Doerner; Matthias Frank; Luca Gelisio; Rebecca Jernigan; Henry Kirkwood; Marco Kloos; Jayanath Koliyadu; Valerio Mariani; Mitchell D Miller; Grant Mills; Garrett Nelson; Jose L Olmos; Alireza Sadri; Tokushi Sato; Alexandra Tolstikova; Weijun Xu; Abbas Ourmazd; John C H Spence; Peter Schwander; Anton Barty; Henry N Chapman; Petra Fromme; Adrian P Mancuso; George N Phillips; Richard Bean; Lois Pollack; Marius Schmidt
Journal:  IUCrJ       Date:  2021-09-09       Impact factor: 4.769

7.  Quantifying and comparing radiation damage in the Protein Data Bank.

Authors:  Kathryn L Shelley; Elspeth F Garman
Journal:  Nat Commun       Date:  2022-03-14       Impact factor: 17.694

8.  Structural basis of the radical pair state in photolyases and cryptochromes.

Authors:  Andrea Cellini; Madan Kumar Shankar; Weixiao Yuan Wahlgren; Amke Nimmrich; Antonia Furrer; Daniel James; Maximilian Wranik; Sylvain Aumonier; Emma V Beale; Florian Dworkowski; Jörg Standfuss; Tobias Weinert; Sebastian Westenhoff
Journal:  Chem Commun (Camb)       Date:  2022-04-14       Impact factor: 6.222

9.  Stabilisation of the Fatty Acid Decarboxylase from Chlorella variabilis by Caprylic Acid.

Authors:  Yinqi Wu; Caroline E Paul; Frank Hollmann
Journal:  Chembiochem       Date:  2021-06-01       Impact factor: 3.164

Review 10.  Glucose Oxidase, an Enzyme "Ferrari": Its Structure, Function, Production and Properties in the Light of Various Industrial and Biotechnological Applications.

Authors:  Jacob A Bauer; Monika Zámocká; Juraj Majtán; Vladena Bauerová-Hlinková
Journal:  Biomolecules       Date:  2022-03-19
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