Literature DB >> 33829386

Volume Reduction Techniques for the Classification of Independent Components of rs-fMRI Data: a Study with Convolutional Neural Networks.

Leonel Mera Jiménez1,2, John F Ochoa Gómez3,4.   

Abstract

In the last decade, neurosciences have had an increasing interest in resting state functional magnetic resonance imaging (rs-fMRI) as a result of its advantages, such as high spatial resolution, compared to other brain exploration techniques. To improve the technique, the elimination of artifacts through Independent Components Analysis (ICA) has been proposed, as this can separate neural signal and noise, opening possibilities for automatic classification. The main classification techniques have focused on processes based on typical machine learning. However, there are currently more robust approaches such as convolutional neural networks, which can deal with complex problems directly from the data without feature selection and even with data that does not have a simple interpretation, being limited by the amount of data necessary for training and its high computational cost. This research focused on studying four methods of volume reduction mitigating the computational cost for the training of 3 models based on convolutional neural networks. One of the reduction techniques is a novel approach that we call Reduction by Consecutive Binary Patterns (RCBP), which was shown to preserve the spatial features of the independent components. In addition, the RCBP showed networks in components associated with neuronal activity more clearly. The networks achieved accuracy above 98 % in classification, and one network was even found to be over 99 % accurate, outperforming most machine learning-based classification algorithms.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Convolutional neural network; Deep learning; Denoising; Independent component analysis; rs-fMRI

Mesh:

Year:  2021        PMID: 33829386     DOI: 10.1007/s12021-021-09524-9

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  12 in total

Review 1.  The brain's default mode network.

Authors:  Marcus E Raichle
Journal:  Annu Rev Neurosci       Date:  2015-05-04       Impact factor: 12.449

2.  ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data.

Authors:  Raimon H R Pruim; Maarten Mennes; Daan van Rooij; Alberto Llera; Jan K Buitelaar; Christian F Beckmann
Journal:  Neuroimage       Date:  2015-03-11       Impact factor: 6.556

3.  Evaluation of ICA-AROMA and alternative strategies for motion artifact removal in resting state fMRI.

Authors:  Raimon H R Pruim; Maarten Mennes; Jan K Buitelaar; Christian F Beckmann
Journal:  Neuroimage       Date:  2015-03-11       Impact factor: 6.556

4.  Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review.

Authors:  Waseem Rawat; Zenghui Wang
Journal:  Neural Comput       Date:  2017-06-09       Impact factor: 2.026

Review 5.  Medical Image Analysis using Convolutional Neural Networks: A Review.

Authors:  Syed Muhammad Anwar; Muhammad Majid; Adnan Qayyum; Muhammad Awais; Majdi Alnowami; Muhammad Khurram Khan
Journal:  J Med Syst       Date:  2018-10-08       Impact factor: 4.460

6.  Contrast-enhanced angiographic computed tomography for detection of aneurysm remnants after clipping: a comparison with digital subtraction angiography in 112 clipped aneurysms.

Authors:  Philipp Gölitz; Tobias Struffert; Oliver Ganslandt; Stefan Lang; Frauke Knossalla; Arnd Doerfler
Journal:  Neurosurgery       Date:  2014-06       Impact factor: 4.654

Review 7.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

Review 8.  Deep Learning for Health Informatics.

Authors:  Daniele Ravi; Charence Wong; Fani Deligianni; Melissa Berthelot; Javier Andreu-Perez; Benny Lo; Guang-Zhong Yang
Journal:  IEEE J Biomed Health Inform       Date:  2016-12-29       Impact factor: 5.772

9.  Automatic denoising of functional MRI data: combining independent component analysis and hierarchical fusion of classifiers.

Authors:  Gholamreza Salimi-Khorshidi; Gwenaëlle Douaud; Christian F Beckmann; Matthew F Glasser; Ludovica Griffanti; Stephen M Smith
Journal:  Neuroimage       Date:  2014-01-02       Impact factor: 6.556

10.  The minimal preprocessing pipelines for the Human Connectome Project.

Authors:  Matthew F Glasser; Stamatios N Sotiropoulos; J Anthony Wilson; Timothy S Coalson; Bruce Fischl; Jesper L Andersson; Junqian Xu; Saad Jbabdi; Matthew Webster; Jonathan R Polimeni; David C Van Essen; Mark Jenkinson
Journal:  Neuroimage       Date:  2013-05-11       Impact factor: 6.556

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