Seunghyeon Kim1, Yining Hao1, Eric A Miller1, Dousabel M Y Tay1, Emma Yee1, Patthara Kongsuphol2, Huan Jia2, Megan McBee2, Peter R Preiser2,3, Hadley D Sikes1,4,2. 1. Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States. 2. Antimicrobial Resistance Interdisciplinary Research Group, Singapore-MIT Alliance for Research and Technology, 1 CREATE Way, Singapore 138602. 3. School of Biological Sciences, Nanyang Technological University Singapore, Singapore 639798, Singapore. 4. Program in Polymers and Soft Matter, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States.
Abstract
Rapid and inexpensive serological tests for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) antibodies are essential to conduct large-scale seroprevalence surveys and can potentially complement nucleic acid or antigen tests at the point of care. During the COVID-19 pandemic, extreme demand for traditional lateral flow tests has stressed manufacturing capacity and supply chains. Motivated by this limitation, we developed a SARS-CoV-2 antibody test using cellulose, an alternative membrane material, and a double-antigen sandwich format. Functionalized SARS-CoV-2 antigens were used as both capture and reporter binders, replacing the anti-human antibodies currently used in lateral flow tests. The test could provide enhanced sensitivity because it labels only antibodies against SARS-CoV-2 and the signal intensity is not diminished due to other human antibodies in serum. Three-dimensional channels in the assay were designed to have consistent flow rates and be easily manufactured by folding wax-printed paper. We demonstrated that this simple, vertical flow, cellulose-based assay could detect SARS-CoV-2 antibodies in clinical samples within 15 min, and the results were consistent with those from a laboratory, bead-based chemiluminescence immunoassay that was granted emergency use approval by the US FDA.
Rapid and inexpensive serological tests for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) antibodies are essential to conduct large-scale seroprevalence surveys and can potentially complement nucleic acid or antigen tests at the point of care. During the COVID-19 pandemic, extreme demand for traditional lateral flow tests has stressed manufacturing capacity and supply chains. Motivated by this limitation, we developed a SARS-CoV-2 antibody test using cellulose, an alternative membrane material, and a double-antigen sandwich format. Functionalized SARS-CoV-2 antigens were used as both capture and reporter binders, replacing the anti-human antibodies currently used in lateral flow tests. The test could provide enhanced sensitivity because it labels only antibodies against SARS-CoV-2 and the signal intensity is not diminished due to other human antibodies in serum. Three-dimensional channels in the assay were designed to have consistent flow rates and be easily manufactured by folding wax-printed paper. We demonstrated that this simple, vertical flow, cellulose-based assay could detect SARS-CoV-2 antibodies in clinical samples within 15 min, and the results were consistent with those from a laboratory, bead-based chemiluminescence immunoassay that was granted emergency use approval by the US FDA.
Serological testing for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)
antibodies has played a crucial role in monitoring and responding to COVID-19 pandemic. This
kind of test detects antibodies produced in response to SARS-CoV-2 infection. Because
antibodies persist in bodily fluids far longer than viral RNA or antigens, their presence
provides information on both late-stage and past infections.[1] Therefore,
serology has been used as a key tool in seroprevalence surveys to identify people who have
been infected, but may not have been diagnosed due to mild illness or no symptoms, enabling
a better understanding of transmission dynamics of the virus.[2]
Furthermore, serology can assist nucleic acid or antigen tests to reduce false-negative
results at a later stage of infection, where viral load is significantly reduced upon
seroconversion.[3−7]Enzyme-linked immunosorbent assays and magnetic bead-based chemiluminescent or fluorescent
immunoassays are widely used for serological tests because these methods are relatively less
expensive, high throughput, sensitive, and quantitative.[8−10] However, they may not be suitable for point-of-care testing or screening
at massive scale, which is in high demand during the pandemic, because those methods depend
on centralized-laboratory infrastructure and sample-transport logistics. Lateral flow
assays, on the other hand, are rapid, easy-to-use, and instrument-free, providing
qualitative results in 20 min.[1,10] Although their accuracy is not yet comparable to the lab-based
methods,[9,11] this
type of test may help conduct large-scale seroprevalence surveys and can potentially
complement nucleic acid or antigen tests at the point of care if their manufacturing
bottlenecks are resolved.In most lateral flow assays authorized by the FDA under Emergency Use Authorization
(EUA),[9] anti-human IgG and anti-human IgM antibodies are used as
capture or reporter reagents in tests for SARS-CoV-2 antibodies. Used as capture reagents,
anti-human IgG or IgM antibodies are deposited on separate test lines to capture IgG and IgM
antibodies from patientsamples. Used as reporter reagents, anti-human antibodies conjugated
to nanoparticles are used to label SARS-CoV-2-specific antibodies captured from patientsamples by SARS-CoV-2 antigens deposited on test lines. However, these strategies
intrinsically reduce the sensitivity of assays because other human IgG (7–16 g/L) and
IgM (0.4–2.3 g/L) antibodies are commonly present in blood[12]
regardless of SARS-CoV-2 infection and they compete with target SARS-CoV-2 antibodies, if
present, for binding with the anti-human antibody reagents. A double-antigen sandwich
format,[13,14] on the
other hand, leverages the multivalency of target antibodies (IgG and IgM) using
functionalized antigens as both capture and reporter reagents, replacing the anti-human
antibodies. This design can potentially improve assay sensitivity because it prevents
diminished signals due to non-SARS-CoV-2 antibodies in blood.[13−15]To assess this double-antigen strategy, we created a vertical flow, cellulose-based
SARS-CoV-2 antibody assay with two motivations. First, this platform can provide an
alternative to traditional lateral flow assays. This cellulose-based assay uses orthogonal
materials (e.g., cellulose and enzymes) to those (e.g., nitrocellulose membrane,
nanoparticles, and anti-human antibodies) required for lateral flow assays. The vertical
flow channel can be manufactured by folding wax-printed paper[16,17] versus aligning many different pads
and sealing with cassettes or adhesives to make lateral flow assays.[18]
Second, we wanted to explore using a cellulose-binding domain (CBD) as a fusion partner for
an antigen, which we hypothesized would allow rapid immobilization of SARS-CoV-2 antigens
with oriented display on a cellulosic test zone via specific interactions between CBD and
cellulose. As described in earlier work on the topic of antigen[19] rather
than serology tests, this CBD fusion method can yield approximately 90% immobilization
efficiency with only 30 s of contact, suggesting promise for quick and sensitive serological
tests.We chose SARS-CoV-2 nucleocapsid protein (NP) as the antigen for the target antibodies
because NP was the most abundant antigen at the early stage of SARS-CoV infection and
initiated a strong antibody response.[20−22] A new study
supports this idea that detection of antibodies against SARS-CoV-2NP is more sensitive than
antibodies against the other commonly used antigen, spike protein.[23] In
the present study, we probed importance of the flow rate in the assay and optimized
production of NP and NP-CBD in bacterial hosts. Using NP-CBD as the capture reagent and
biotinylated NP (NP-biotin) with streptavidin horseradish peroxidase conjugate (SA-HRP) as
the reporter reagent, we successfully demonstrated that target antibodies simultaneously
associated with both NP-CBD and NP-biotin-SA-HRP were immobilized on the cellulosic test
zone. Finally, we verified the function of the vertical flow assay with inactivated clinical
samples, confirming that sera from SARS-CoV-2 infectedpatients produced distinctively
higher colorimetric signals than sera from healthy individuals.
Results and Discussion
To prevent the interference of other human antibodies in serological tests and achieve more
sensitive detection of SARS-CoV-2 antibodies, we adopted a double-antigen sandwich
format[13,14] in a
vertical flow paper-based assay (Scheme ). In this
test, SARS-CoV-2 nucleocapsid protein (NP) is used as an affinity tag for target antibodies
in both capture and reporter reagents, using the multivalency of antibodies. Unlike other
tests using anti-human antibodies, this approach cannot distinguish between SARS-CoV-2 IgG
and IgM antibodies. However, given the range of temporal IgG and IgM expression observed
across patients,[6,7,24] the ability to detect both antibodies expands the flexibility of this
test and concentrates signal in one location for potentially augmented sensitivity. The
capture and reporter reagents used in this assay are NP fused to cellulose-binding domain
(CBD) and biotinylated NP (NP-biotin), respectively. The biotin on NP serves to conjugate NP
with horseradish peroxidase (HRP) via strong biotin–streptavidin (SA) interaction.
Thus, when a patientsample is mixed with the reagents, the reporting enzyme (HRP) will be
associated with CBD to form enzyme-antibody-CBDsandwich complexes as patient antibodies
link the capture and reporter reagents (Scheme a,b). Following the incubation, the sample-reagent mixture is applied to cellulose
test zone, where the enzyme-antibody-CBD complexes are immobilized through specific binding
between CBD and cellulose (Scheme c). Aided by
addition of wash buffer, other complexes without CBD flow through the vertical channel and
arrive at the absorbent pad. Upon addition of a 3,3′,5,5′-tetramethylbenzidine
(TMB) substrate solution containing a stable peroxide (Thermo Fisher 34028), test zones with
blue color indicate positive patientsamples. Notably, because the color develops on the top
layer, unfolding the device is not required to interpret the results. As illustrated in
Scheme d, we designed the vertical flow channel
to have four layers with a large circular region on the top layer and a smaller circular
region on the following layers as this channel could achieve more consistent flow rates than
a single-layer device (Figure ), and also slower
flow rates, promoting reliably high CBD capture efficiency. In this study, the
three-dimensional channel was fabricated using wax-printed paper folded manually. However,
the design is amenable to large-scale manufacturing using an industrial paper-folding
machine.
Scheme 1
Vertical-Flow Paper-Based Assays for SARS-CoV-2 Antibody Detection
(a) Human serum is incubated with reagents including SARS-CoV-2 nucleocapsid protein
fused to cellulose-binding domain (NP-CBD), biotinylated NP (NP-biotin), and
streptavidin horseradish peroxidase conjugate (SA-HRP). (b) The NP–enzyme
complex (NP-biotin-SA-HRP) is coupled with NP-CBD only in the presence of target
antibodies. (c) The mixture of sample and reagents is applied to a cellulose-based
test zone, immediately followed by washing buffer and then TMB substrate solution. The
positive test zone produces blue color because antibodies against SARS-CoV-2
immobilize HRP on the test zone through the interaction between NP-CBD and cellulose.
(d) The paper-based assays are prepared by folding wax-printed four-layer paper
devices and clamping them to absorbent pads.
Figure 1
Comparison of flow rates in single-layer devices and multilayer (four-layer) devices.
Single-layer and multilayer (four-layer) vertical flow test strips were clamped together
with absorbent pads. To each device, 50 μL of human serum and 25 μL of
washing buffer (1 × PBS) were added. The time required to absorb all solutions was
measured to calculate average flow rates. Six replicates were conducted for both
single-layer and multilayer devices. Raw data are available in Table S1.
Comparison of flow rates in single-layer devices and multilayer (four-layer) devices.
Single-layer and multilayer (four-layer) vertical flow test strips were clamped together
with absorbent pads. To each device, 50 μL of human serum and 25 μL of
washing buffer (1 × PBS) were added. The time required to absorb all solutions was
measured to calculate average flow rates. Six replicates were conducted for both
single-layer and multilayer devices. Raw data are available in Table S1.
Vertical-Flow Paper-Based Assays for SARS-CoV-2 Antibody Detection
(a) Human serum is incubated with reagents including SARS-CoV-2 nucleocapsid protein
fused to cellulose-binding domain (NP-CBD), biotinylated NP (NP-biotin), and
streptavidin horseradish peroxidase conjugate (SA-HRP). (b) The NP–enzyme
complex (NP-biotin-SA-HRP) is coupled with NP-CBD only in the presence of target
antibodies. (c) The mixture of sample and reagents is applied to a cellulose-based
test zone, immediately followed by washing buffer and then TMB substrate solution. The
positive test zone produces blue color because antibodies against SARS-CoV-2
immobilize HRP on the test zone through the interaction between NP-CBD and cellulose.
(d) The paper-based assays are prepared by folding wax-printed four-layer paper
devices and clamping them to absorbent pads.In designing our capture reagent, we cloned NP with CBD on the C-terminus (NP-CBD) and
N-terminus (CBD-NP) to compare their performance. The two variants were expressed in BL21
(DE3) Escherichia coli and purified with IMAC resin. NP-CBD was
successfully purified, and its purity was checked by SDS-PAGE (Figure A). However, after purification of CBD-NP, truncated products with
lower molecular weight were observed (Figure S2). Despite the addition of various amounts of protease inhibitor
during the cell lysing process, it was not possible to significantly reduce these truncation
products. It is likely that the translation of N-terminus CBD-NP was terminated prematurely
in vivo. Therefore, NP-CBD was chosen to be the capture reagent for the
remainder of this study.
Figure 2
SDS-PAGE gel image of purified recombinant products. (A) NP-CBD band is observed near
its theoretical molecular weight (66 kDa). (B) NP band is observed at approximately 48
kDa. The full gel images are available in Figure S1.
SDS-PAGE gel image of purified recombinant products. (A) NP-CBD band is observed near
its theoretical molecular weight (66 kDa). (B) NP band is observed at approximately 48
kDa. The full gel images are available in Figure S1.To generate biotinylated NP as the reporter molecule, we attempted to biotinylate the NP
in vivo. A biotin acceptor peptide, AviTag, that enables in
vivo enzymatic biotinlyation during protein expression was fused to the
N-terminus of NP. To improve the accessibility of the biotin acceptor peptide, a flexible
(G4S)2 linker sequence was inserted between the AviTag and NP
sequence. After purification, NP was avidin purified to exclude any nonbiotinylated portion
of NP. The extent of in vivo biotinylation was very low, making it
impossible to quantify by the bicinchoninic acid assay. One possible reason was that the
linker was insufficient to facilitate the access of biotin. We therefore sought to
biotinylate the recombinant NP through a chemical method. The purified NP (Figure B) was reacted with an
N-hydroxysuccinimide ester derivative of biotin. The labeling efficiency
was 1.3 biotin per NP.We then investigated the effect of reagent concentrations on the assay performance (Figure ). Here, negative and positive control samples
were prepared by spiking 0 and 40 nM SARS-CoV-2NP monoclonal rabbit antibody into human
serum to simulate nonspecific binding signals (N) and specific binding
signals (S). In the first experiment, we varied the concentration of SA-HRP
in the reagent mixture with fixed concentrations of NP-CBD and NP-biotin (Figure A). The blue color intensity increased in both 0 and 40
nM antibody-spiked samples as higher concentrations of SA-HRP were used. The increasing
trend of signal difference (S–N) indicates that, at
higher concentrations of the enzyme, more SA-HRP actually labeled
(NP-CBD)-(antibody)-(NP-biotin) complexes rather than being nonspecifically bound to the
test zone. Next, we explored different concentrations of NP-CBD and NP-biotin with fixed
concentration of SA-HRP (Figure B). Kinetic
modeling of the binding reactions (Figure )
indicated that equimolar amounts of NP-CBD and NP-biotin would maximize the number of
antibody complexes labeled with both NP-CBD and NP-biotin, and for this reason, we
maintained an equimolar concentration of the capture (NP-CBD) and reporter (NP-biotin)
proteins throughout the optimization. The blue color intensity increased in both 0 and 40 nM
antibody-spiked samples as higher concentrations of NP-CBD and NP-biotin were used. However,
a maximal signal difference (S–N) was obtained when
100 nM of NP-CBD and NP-biotin were used with higher concentrations, leading to a decrease
of S–N. The data suggests that while more antibodies can be labeled
with both CBD and HRP when higher concentrations of NP-CBD and NP-biotin are used, it also
contributes to nonspecific binding of SA-HRP to cellulose paper. We speculate that more
NP-biotin is nonspecifically bound to paper when used at a higher concentration, causing
more SA-HRP to immobilize on paper even without SARS-CoV-2NP antibodies.
Figure 3
Effect of reagent concentrations in the sample–reagent mixture on the assay
performance. (A) The concentration of SA-HRP was varied while each concentration of
NP-CBD and NP-biotin was fixed at 100 nM. (B) The concentrations of NP-CBD and NP-biotin
were varied with the concentration of SA-HRP fixed at 400 pM, the optimal value from the
previous experiment. Under each condition, positive controls were prepared by spiking 40
nM SARS-CoV-2 NP antibody (40 nM Ab) into human serum, and negative controls were human
serum without the antibody (0 nM Ab). The signal from each test zone was obtained by
quantifying the cyan intensity of its color. The ratio of specific binding signals
(S) to nonspecific binding signals (N) and their
difference (S–N) were chosen to evaluate the
assay performance under each condition.
Figure 4
Formation of desired antibody complex from various concentrations of NP-CBD and
NP-biotin. The concentration of the desired complex is presented as a heat map. The
dotted line indicates that an equimolar concentration of NP-CBD and NP-biotin can
produce the highest concentration of the desired complex. The model simulated the
binding kinetics within NP-CBD, NP-biotin, and 1 nM patient antibody mixture for 15 min.
Detailed information on the kinetic modeling is available in Figure S3.
Effect of reagent concentrations in the sample–reagent mixture on the assay
performance. (A) The concentration of SA-HRP was varied while each concentration of
NP-CBD and NP-biotin was fixed at 100 nM. (B) The concentrations of NP-CBD and NP-biotin
were varied with the concentration of SA-HRP fixed at 400 pM, the optimal value from the
previous experiment. Under each condition, positive controls were prepared by spiking 40
nM SARS-CoV-2NP antibody (40 nM Ab) into human serum, and negative controls were human
serum without the antibody (0 nM Ab). The signal from each test zone was obtained by
quantifying the cyan intensity of its color. The ratio of specific binding signals
(S) to nonspecific binding signals (N) and their
difference (S–N) were chosen to evaluate the
assay performance under each condition.Formation of desired antibody complex from various concentrations of NP-CBD and
NP-biotin. The concentration of the desired complex is presented as a heat map. The
dotted line indicates that an equimolar concentration of NP-CBD and NP-biotin can
produce the highest concentration of the desired complex. The model simulated the
binding kinetics within NP-CBD, NP-biotin, and 1 nM patient antibody mixture for 15 min.
Detailed information on the kinetic modeling is available in Figure S3.To achieve a low limit of detection as well as high sensitivity, it is essential to reduce
nonspecific binding signals (N) and enhance specific binding signals
(S). Thus, we compared the signal ratio
(S/N) and the signal difference
(S–N) under each condition (Figure ). Notably, neither higher
S/N values nor higher
S–N values could help find the best condition
that provided both the smallest N and the largest S
because none of them alone could reflect the whole picture. The largest
S/N value was obtained with the smallest
N at 100 pM SA-HRP (Figure A)
even though the S value was relatively small. The largest
S–N value resulted from the largest
S at 750 pM SA-HRP (Figure A),
but the N value was also too high. Therefore, we chose
S/N ×
(S–N) as an objective function to optimize
N and S at the same time and maximized it at 400 pM
SA-HRP, 100 nM NP-CBD, and 100 nM NP-biotin.After optimizing the reagent concentrations, we assessed the sensitivity of the vertical
flow SARS-CoV-2 antibody test using SARS-CoV-2NP rabbit antibody as a mock target, spiked
into human serum. As demonstrated in Figure A,
higher concentrations of the antibody produced more intense blue color. We quantified the
color intensity of each image in the cyan channel and defined the LOD by requiring signals
greater than the mean intensity of the 0 nM samples plus three standard deviations above the
mean, resulting in an LOD of 5 nM (Figure B). At
this LOD concentration, the lowest cyan intensity was 0.186, so we defined it as a cutoff
value for distinguishing between positive and negative samples.
Figure 5
Dose response curve for the vertical flow paper-based assays with SARS-CoV-2 NP
antibody spiked into human serum. (A) Images of the assay results. Four replicates were
obtained at each concentration of the antibody. (B) Colorimetric intensity (cyan) values
were calculated using ImageJ. The Neg + 3σ line was determined with the mean cyan
intensity (Neg) of 0 nM samples and their standard deviation (σ), demonstrating
that the limit of detection for the antibody is around 5 nM.
Dose response curve for the vertical flow paper-based assays with SARS-CoV-2NP
antibody spiked into human serum. (A) Images of the assay results. Four replicates were
obtained at each concentration of the antibody. (B) Colorimetric intensity (cyan) values
were calculated using ImageJ. The Neg + 3σ line was determined with the mean cyan
intensity (Neg) of 0 nM samples and their standard deviation (σ), demonstrating
that the limit of detection for the antibody is around 5 nM.Finally, we tested three clinical samples in both vertical flow paper-based assays and
magnetic bead-based chemiluminescence immunoassays (Figure ). Biosafety standards at the time required inactivation of clinical samples with
1 v/v% Triton X-100, so negative control samples were also prepared by treating human serum
with 1 v/v% Triton X-100.[26] All three SARS-CoV-2patientsamples with
three replicates produced stronger blue color than negative samples, which can be
differentiated by the naked eye (Figure A). A
color chart or, better yet, a colorimetric reader with automated image analysis would be
useful for unambiguous interpretation of test results. Quantitative colorimetric intensities
from all three patientsamples were notably higher than the predetermined cutoff value,
whereas the negative control samples produced lower colorimetric intensity than the cutoff
(Figure B). Comparing Figure
B with Figure B, the
signals from negative samples increased slightly due to the addition of Triton X-100. The
assay results agreed with the chemiluminescence immunoassay results obtained using Diazyme
DZ-Lite SARS-CoV-2 IgG and IgM CLIA Kits (Figure C). These assays have been authorized by FDA under an EUA for use by authorized
laboratories.[27] Clinical sensitivity for SARS-CoV-2 IgG detection is
96.2% positive percent agreement (PPA) against RT-PCR after >7 days post symptom onset
and 100% PPA after ≥15 days post symptom onset.[27] Clinical
sensitivity for SARS-CoV-2 IgM detection is 92.1% PPA after >7 days post symptom onset
and 93.9% PPA after ≥15 days post symptom onset.[27] With the
paper-based assays, we expected that a much higher concentration of antibodies was included
in patientsample 1 (P1), which was confirmed by the chemiluminescence immunoassay. However,
there was slight inconsistency in patientsample 2 (P2) and patientsample 3 (P3). According
to the chemiluminescence assay results, the signals from SARS-CoV-2 antibodies were higher
in P2 than in P3, but the trend was opposite in the paper-based assays. We speculate that
the difference could result from what antigens were used to detect SARS-CoV-2 antibodies. In
our design, we used only SARS-CoV-2NP, but the chemiluminescence assay used both the NP and
spike protein. It is possible that more spike protein-specific antibodies were present in P2
than in P3. In addition, we assessed the performance of vertical flow paper-based assays
with immobilized NP-CBD that used HRP-conjugated anti-human IgG or anti-human IgM antibodies
as reporter reagents (Figure S4). Unsurprisingly, the signal intensity from antibody-positive
samples was much lower than in the double-antigen format presumably due to interfering
non-SARS-CoV-2 IgG and IgM antibodies.
Figure 6
Clinical sample analysis comparing the vertical-flow paper-based assay and magnetic
bead-based chemiluminescence immunoassay. (A) Images of the assay results with three
PCR-confirmed SARS-CoV-2 patient samples (P1, P2, and P3) and human serum collected
before the SARS-CoV-2 pandemic. (B) Colorimetric intensity (cyan) values were calculated
using ImageJ. All patient samples show higher colorimetric intensity than the cutoff
represented as a dotted line. Negative sample data lie below the cutoff. (C) Magnetic
bead-based chemiluminescence immunoassay[25] results show the IgG and
IgM levels in the patient samples (arbitrary units).
Clinical sample analysis comparing the vertical-flow paper-based assay and magnetic
bead-based chemiluminescence immunoassay. (A) Images of the assay results with three
PCR-confirmed SARS-CoV-2patientsamples (P1, P2, and P3) and human serum collected
before the SARS-CoV-2 pandemic. (B) Colorimetric intensity (cyan) values were calculated
using ImageJ. All patientsamples show higher colorimetric intensity than the cutoff
represented as a dotted line. Negative sample data lie below the cutoff. (C) Magnetic
bead-based chemiluminescence immunoassay[25] results show the IgG and
IgM levels in the patientsamples (arbitrary units).A much larger number of clinical samples must be analyzed using the vertical flow
cellulose-based tests reported herein to calculate clinical sensitivity, specificity, and
PPA values. Institutional biosafety policies precluded such a study. However, the finding
that patient antibodies in a small number of inactivated SARS-CoV-2 positive samples
recognized both the NP-CBD and biotinylated NP reagents we developed, and that results using
the new cellulose-based assay agreed with results from a laboratory-based test that has been
granted EUA by the FDA motivated a follow-up study that will be reported separately with
clinical collaborators.
Conclusions
We demonstrated that vertical-flow, cellulose-based tests can successfully detect
SARS-CoV-2 antibodies in human serum using functionalized SARS-CoV-2 nucleocapsid protein as
both capture and reporter reagents. By replacing anti-human antibodies as capture or
reporter reagents, we could reduce the interference from non-SARS-CoV-2human antibodies. In
addition, specific interaction between cellulose and cellulose-binding domain (CBD) of the
capture reagent allowed the cellulose-based test zone to rapidly and selectively immobilize
reporting enzyme (HRP) associated with CBD in the presence of target antibodies. More
detailed studies of the reaction and transport rates in this new system are warranted, with
a variety of grades of cellulose in addition to the one used here, offering further control
of flow rates and reaction rates between CBD and cellulose that can be used to tune
analytical performance. This work reveals the possibility of using cellulose-based assays
for extensive serological testing. We hope that this simple, rapid, and easy-to-scale
approach to serological testing can be implemented to help large-scale SARS-CoV-2
seroprevalence surveys and complement other SARS-CoV-2 diagnostic tests at the point of
care.
Materials and Methods
Materials
Human serum (H4522), 10 × phosphate-buffered saline (PBS), D-biotin (B4639), and
Microspin G-25 columns (GE27-5325-01) were purchased from Millipore Sigma (St. Louis, MO).
Streptavidin horseradish peroxidase conjugate (SA-HRP) (N100), TMB substrate solution
(34028), 10% BSA in 1 × PBS (37525), Pierce BCA Protein Assay Kit (23225), Pierce
Monomeric Avidin Agarose Kit (432040), EZ-Link Sulfo-NHS-LC-Biotin (A39257), and Halt
protease inhibitor cocktail (100×) (87786) were purchased from Thermo Fisher
Scientific (Waltham, MA). SARS-CoV-2NP antibody (40143-R019) was purchased from Sino
Biological (Wayne, PA). Whatman Grade 1 Chr Cellulose Chromatography paper (21427-003),
glycerol (97062-452), Kanamycin sulfate (97061-600), Terrific Broth Powder (97063-418),
and isopropyl-β-d-thiogalactoside (IPTG) 99% dioxane-free (AAB21149-06)
were obtained from VWR (Radnor, PA). Blot paper (1703965), 4–15% Mini-PROTEAN TGX
Stain-Free Precast Gels (4568083), Precision Plus Protein All Blue Prestained Protein
Standards (1610373), Precision Plus Protein Unstained Standards (1610363), and Nuvia IMAC
Resin (7800800) were purchased from Bio-Rad Laboratories, Inc. (Hercules, CA). Restriction
enzyme NdeI (R0111S), XhoI (R0146S),
BamHI (R3136S), and EcoRI (R3101S) were purchased from
New England BioLabs (Ipswich, MA). Human serum samples collected from PCR-confirmed
SARS-CoV-2-positive patients were purchased from Brio Systems and Curebase. These
biobanked samples were collected with informed consent and IRB approval (IntegReview,
CURE19-001) and provided deidentified.
Production of Gene Constructs
Recombinant SARS-CoV-2 nucleocapsid protein (NP) was cloned into the pET28b(+) between
NdeI and XhoI restriction sites for bacteria
expression. The NP sequence was acquired from NCBI[28] and synthesized by
Genewiz. To make NP with cellulose-binding domain (CBD) on the C-terminus, the NP sequence
was amplified by NP-CBD-For and C19 NR primers at an
annealing temperature of 58.9 °C. NdeI and BamHI
restriction sites were appended to the appropriate end of the sequence. The amplicon was
then subjected to the double digestion with NdeI and
BamHI restriction enzymes at 37 °C for an hour. The insert was then
ligated into double digested backbone vector pET28b(+) rcSso7d.SA-CBD as previously
described.[29]To make NP with CBD on the N-terminus, the type 3a CBD was amplified by
N-CBD-for and N-term-CBD-Linker-rev primers using
previously described rcSso7d.SA-CBD as a template.[28] A
(G4S)3 linker as well as a BamHI restriction site
were appended to the CBD sequence in this PCR reaction. The NP sequence was amplified by
C-term-NP-for and C-term-NP-rev primers, appending
BamHI and XhoI restriction sites. The products of the
two PCR reactions were subjected to restriction digest by BamHI and the
digested products were ligated together. The ligated product was subjected to the double
digestion by NdeI and XhoI and was then ligated into
double digested backbone pET28b(+) rcSso7d.SA-CBD.[29]A construct of NP with N-terminus AviTag[30] (BA-NP) was generated to
allow in vivo biotinylation of NP. The NP sequence was amplified by
and
Covid19NP- primers at an annealing
temperature of 55.2 °C. The amplicon was double digested by EcoRI
and XhoI at 37 °C for an hour and ligated into digested pET28b(+) N
terminal BA-MBP-rcSso7d vector previously described.[31]Forward and reverse primers were designed and characterized using the IDT Oligoanalyzer
tool, and the oligonucleotide sequences are reported in Table S2. Protein sequences are provided in Table S3.
Protein Expression, Purification, and Characterization
Details are provided in the Supporting Information.
Vertical-Flow Paper-Based Assays
Test strips were made by wax-printing four layers containing wax-free circular regions on
Whatman Grade 1 cellulose paper and melting the wax-printed paper in an oven at 150
°C for 30 s. The final diameter of hydrophilic wells in the top layer and in the
following layers were 3 and 2.5 mm, respectively. The wax-free surface was blocked with 5%
BSA in 1 × PBS. The four-layer devices were then folded and clamped together with
absorbent pad (blot paper). Standard reagent solution was prepared by mixing two parts of
1.6 nM SA-HRP, one part of 800 nM NP-CBD, and one part of 800 nM NP-biotin to give 800 pM
SA-HRP, 200 nM NP-CBD, and 200 nM NP-biotin in 1% BSA in 1 × PBS. For one test, 25
μL of human serum was mixed with the same volume of the reagent solution and
incubated for 5 min. This sample–reagent mixture (50 μL) was applied to test
zone. Following the sample loading, the test zone was washed with 1 × PBS (25
μL). Finally, 10 μL of TMB substrate solution was added to the test zone and
imaged after 5 min.
Colorimetric Analysis
Test zone images were opened in ImageJ, and the circular region was selected and
converted from RGB to CMYK. The selected image was separated into cyan, magenta, yellow,
and black channels. The colorimetric intensity in the cyan channel was measured and used
for further analysis.
Inactivation of Clinical Samples
Human serum samples collected from PCR-confirmed positive patients were treated with 1%
Triton X-100 for 30 min according to the inactivation protocol[26] and
stored at −20 °C before use.
Authors: F Dati; G Schumann; L Thomas; F Aguzzi; S Baudner; J Bienvenu; O Blaabjerg; S Blirup-Jensen; A Carlström; P H Petersen; A M Johnson; A Milford-Ward; R F Ritchie; P J Svendsen; J Whicher Journal: Eur J Clin Chem Clin Biochem Date: 1996-06
Authors: Edward I Patterson; Tessa Prince; Enyia R Anderson; Aitor Casas-Sanchez; Shirley L Smith; Cintia Cansado-Utrilla; Tom Solomon; Michael J Griffiths; Álvaro Acosta-Serrano; Lance Turtle; Grant L Hughes Journal: J Infect Dis Date: 2020-10-01 Impact factor: 5.226
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