Literature DB >> 33817771

Mitochondrial genome architecture and phylogenetic relationships of Odontesthes argentinensis within Atherinomorpha.

Javier Calvelo1, Alejandro D'Anatro2.   

Abstract

Silversides are a widely distributed group across South America, with several species occupying marine, freshwater and estuarine environments. Several authors suggest main transitions among these environments took place during Pleistocene, and were accompanied with rapid speciation events. This scenario produced very limited genetic and morphological differentiation among the species. However, most of these surveys have an incomplete coverage of the intraspecific genetic diversity of the taxa studied. In this work, we reconstructed six mitochondrial genomes of O. argentinensis using transcriptomic data, and used them-in combination with several nuclear markers retrieved from the same transcriptomes-to explore the effect of additional coverage of intraspecific diversity of this species in phylogenetic reconstructions. Unlike previous works, phylogenetic analyses failed to identify O. argentinensis as a monophyletic group in relation with closely related taxa. Our results suggest that several species of the genus, especially those related to O. argentinensis, need further taxonomic revision.

Entities:  

Keywords:  Atherinomorpha; Pejerrey; Phylogeny; Silversides; Transcriptomics

Year:  2021        PMID: 33817771     DOI: 10.1007/s10709-021-00116-8

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  36 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Systematic revision of the South American silversides (Teleostei, Atheriniformes).

Authors:  Brian S Dyer
Journal:  Biocell       Date:  2006-04       Impact factor: 1.254

3.  Species concepts and species delimitation.

Authors:  Kevin De Queiroz
Journal:  Syst Biol       Date:  2007-12       Impact factor: 15.683

4.  Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria).

Authors:  Daniela Campanella; Lily C Hughes; Peter J Unmack; Devin D Bloom; Kyle R Piller; Guillermo Ortí
Journal:  Mol Phylogenet Evol       Date:  2015-03-10       Impact factor: 4.286

Review 5.  Genetic aspects of mitochondrial genome evolution.

Authors:  Matthias Bernt; Anke Braband; Bernd Schierwater; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-11-07       Impact factor: 4.286

6.  Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.

Authors:  Olga Chernomor; Arndt von Haeseler; Bui Quang Minh
Journal:  Syst Biol       Date:  2016-04-26       Impact factor: 15.683

7.  Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates.

Authors:  P Charruau; C Fernandes; P Orozco-Terwengel; J Peters; L Hunter; H Ziaie; A Jourabchian; H Jowkar; G Schaller; S Ostrowski; P Vercammen; T Grange; C Schlötterer; A Kotze; E-M Geigl; C Walzer; P A Burger
Journal:  Mol Ecol       Date:  2011-01-08       Impact factor: 6.185

8.  A framework for variation discovery and genotyping using next-generation DNA sequencing data.

Authors:  Mark A DePristo; Eric Banks; Ryan Poplin; Kiran V Garimella; Jared R Maguire; Christopher Hartl; Anthony A Philippakis; Guillermo del Angel; Manuel A Rivas; Matt Hanna; Aaron McKenna; Tim J Fennell; Andrew M Kernytsky; Andrey Y Sivachenko; Kristian Cibulskis; Stacey B Gabriel; David Altshuler; Mark J Daly
Journal:  Nat Genet       Date:  2011-04-10       Impact factor: 38.330

9.  RNA-DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA.

Authors:  Dan Bar-Yaacov; Gal Avital; Liron Levin; Allison L Richards; Naomi Hachen; Boris Rebolledo Jaramillo; Anton Nekrutenko; Raz Zarivach; Dan Mishmar
Journal:  Genome Res       Date:  2013-08-02       Impact factor: 9.043

10.  Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates.

Authors:  Dan Bar-Yaacov; Idan Frumkin; Yuka Yashiro; Takeshi Chujo; Yuma Ishigami; Yonatan Chemla; Amit Blumberg; Orr Schlesinger; Philipp Bieri; Basil Greber; Nenad Ban; Raz Zarivach; Lital Alfonta; Yitzhak Pilpel; Tsutomu Suzuki; Dan Mishmar
Journal:  PLoS Biol       Date:  2016-09-15       Impact factor: 8.029

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